miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 5' -62.1 NC_005808.1 + 11600 0.66 0.311011
Target:  5'- -cGGCUGGCCGCCgggcagcaGUgCCAGCggaaGCAu -3'
miRNA:   3'- acCCGGCCGGCGGa-------CAaGGUUGg---CGU- -5'
26798 5' -62.1 NC_005808.1 + 16937 0.67 0.261001
Target:  5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3'
miRNA:   3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 19495 0.67 0.261657
Target:  5'- gUGGGCaGGCCGCUg---CgAACCGUg -3'
miRNA:   3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 14136 0.66 0.281987
Target:  5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3'
miRNA:   3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 14923 0.66 0.303548
Target:  5'- -uGGCCGGCCuCaaGUgCCGACUGCGc -3'
miRNA:   3'- acCCGGCCGGcGgaCAaGGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 34378 0.66 0.303548
Target:  5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3'
miRNA:   3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 24508 0.66 0.303548
Target:  5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3'
miRNA:   3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 34904 0.66 0.303548
Target:  5'- cGGcaaGCCGGCCGCCgaggUCaAGCCGaCGa -3'
miRNA:   3'- aCC---CGGCCGGCGGaca-AGgUUGGC-GU- -5'
26798 5' -62.1 NC_005808.1 + 1192 0.66 0.311011
Target:  5'- gGGGUCGGCCgGgUUGUUggaaUAACCGCc -3'
miRNA:   3'- aCCCGGCCGG-CgGACAAg---GUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 4258 0.67 0.255151
Target:  5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3'
miRNA:   3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5'
26798 5' -62.1 NC_005808.1 + 38548 0.67 0.255151
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 28666 0.67 0.242537
Target:  5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3'
miRNA:   3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 19745 0.71 0.135534
Target:  5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3'
miRNA:   3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5'
26798 5' -62.1 NC_005808.1 + 8796 0.7 0.148645
Target:  5'- aUGGGUCGGCCGCgCcggucaguaccgaucUGcugggucgggCCAGCCGCAa -3'
miRNA:   3'- -ACCCGGCCGGCG-G---------------ACaa--------GGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 37444 0.7 0.156887
Target:  5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3'
miRNA:   3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 1712 0.69 0.17277
Target:  5'- gUGGGCCGGCgUGCCggcgagGgcgUCCAAguccUCGCGg -3'
miRNA:   3'- -ACCCGGCCG-GCGGa-----Ca--AGGUU----GGCGU- -5'
26798 5' -62.1 NC_005808.1 + 5523 0.69 0.182201
Target:  5'- aGGacacGCCGGCCGCCcagGUUCC-GCC-CAg -3'
miRNA:   3'- aCC----CGGCCGGCGGa--CAAGGuUGGcGU- -5'
26798 5' -62.1 NC_005808.1 + 9489 0.69 0.187086
Target:  5'- cGGGCgucauGCCaGCCUGUUCC-GCCGUg -3'
miRNA:   3'- aCCCGgc---CGG-CGGACAAGGuUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 21745 0.69 0.192085
Target:  5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3'
miRNA:   3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5'
26798 5' -62.1 NC_005808.1 + 8036 0.68 0.224594
Target:  5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3'
miRNA:   3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.