Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26799 | 3' | -55.3 | NC_005808.1 | + | 5625 | 0.83 | 0.06545 |
Target: 5'- cGGCGUCGAUgUUGGCGaGGUGGCCGu -3' miRNA: 3'- -CCGUAGCUGgAACUGCgCUACCGGCu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 25908 | 0.67 | 0.60935 |
Target: 5'- aGGCGgguuUCGACUUgcagcuUGCGGUGGCCc- -3' miRNA: 3'- -CCGU----AGCUGGAacu---GCGCUACCGGcu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 28318 | 0.67 | 0.598258 |
Target: 5'- cGGCGcgcUCGGCgUcgGACuCGAUGGCCu- -3' miRNA: 3'- -CCGU---AGCUGgAa-CUGcGCUACCGGcu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 18374 | 0.67 | 0.598258 |
Target: 5'- cGGCgagGUUGGCCUugccgaUGGCGCcGGUGGCgGc -3' miRNA: 3'- -CCG---UAGCUGGA------ACUGCG-CUACCGgCu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 40827 | 0.68 | 0.521915 |
Target: 5'- cGUAUCGGCCc-GACGCGccaggcgcaGGCCGGc -3' miRNA: 3'- cCGUAGCUGGaaCUGCGCua-------CCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 16262 | 0.68 | 0.51129 |
Target: 5'- uGGCGUUGGCCUc-GCGCGc-GGCCa- -3' miRNA: 3'- -CCGUAGCUGGAacUGCGCuaCCGGcu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 12008 | 0.68 | 0.51129 |
Target: 5'- -aCGUCGGCCagcaGCGCGGccgUGGCCGGc -3' miRNA: 3'- ccGUAGCUGGaac-UGCGCU---ACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 23314 | 0.69 | 0.500755 |
Target: 5'- cGGCAcUGGCCgggaUGACGUGGUaGCCGc -3' miRNA: 3'- -CCGUaGCUGGa---ACUGCGCUAcCGGCu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 13867 | 0.69 | 0.500755 |
Target: 5'- aGGUuUCGGCCUUuAUGCGAUcgacaGCCGAa -3' miRNA: 3'- -CCGuAGCUGGAAcUGCGCUAc----CGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 41879 | 0.69 | 0.490317 |
Target: 5'- aGGCGcUCGA-CUUGGC-CG-UGGCCGAc -3' miRNA: 3'- -CCGU-AGCUgGAACUGcGCuACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 26320 | 0.69 | 0.479981 |
Target: 5'- aGGCA-CGGUCUUGACGCGcaccgcgaacUGGCCGc -3' miRNA: 3'- -CCGUaGCUGGAACUGCGCu---------ACCGGCu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 35353 | 0.69 | 0.449639 |
Target: 5'- cGGCGacaUCGGCCc--GCGCcaGUGGCCGAa -3' miRNA: 3'- -CCGU---AGCUGGaacUGCGc-UACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 19058 | 0.7 | 0.408069 |
Target: 5'- cGGCGUCGAUCagcgUGuccucgccgaggucACGCGAUugcaGGCCGGc -3' miRNA: 3'- -CCGUAGCUGGa---AC--------------UGCGCUA----CCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 15440 | 0.71 | 0.392309 |
Target: 5'- aGCuuGUUGAuguUCUUGACGCGcccuUGGCCGAa -3' miRNA: 3'- cCG--UAGCU---GGAACUGCGCu---ACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 23573 | 0.71 | 0.374283 |
Target: 5'- cGGCAggugCGGgCggggGGCGaCGAUGGCCGu -3' miRNA: 3'- -CCGUa---GCUgGaa--CUGC-GCUACCGGCu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 13168 | 0.71 | 0.348316 |
Target: 5'- cGGCcaguGUCGGCCgcgcugGGCGCccuUGGCCGGc -3' miRNA: 3'- -CCG----UAGCUGGaa----CUGCGcu-ACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 37138 | 0.71 | 0.348316 |
Target: 5'- ----aCGACCgcGGCGUGAUGGUCGAu -3' miRNA: 3'- ccguaGCUGGaaCUGCGCUACCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 27613 | 0.72 | 0.32366 |
Target: 5'- uGGuCGUCGcCCUUGACGaug-GGCCGGu -3' miRNA: 3'- -CC-GUAGCuGGAACUGCgcuaCCGGCU- -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 15720 | 0.75 | 0.2142 |
Target: 5'- gGGCAUCGAac-UGGCGCGA-GGCCa- -3' miRNA: 3'- -CCGUAGCUggaACUGCGCUaCCGGcu -5' |
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26799 | 3' | -55.3 | NC_005808.1 | + | 37942 | 1.11 | 0.000569 |
Target: 5'- cGGCAUCGACCUUGACGCGAUGGCCGAc -3' miRNA: 3'- -CCGUAGCUGGAACUGCGCUACCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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