miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26799 5' -57.5 NC_005808.1 + 15207 0.69 0.383461
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26799 5' -57.5 NC_005808.1 + 11533 0.68 0.392446
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 7768 0.68 0.42972
Target:  5'- aGCaCCGGCGcgaUCUgCGCCGGCGUCcacccuUCGc -3'
miRNA:   3'- -CG-GGUCGU---AGGgGCGGCUGUAGu-----AGC- -5'
26799 5' -57.5 NC_005808.1 + 24594 0.67 0.459001
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26799 5' -57.5 NC_005808.1 + 41795 0.67 0.468996
Target:  5'- aGCCCAGCca-CCUGCUGACGg---CGa -3'
miRNA:   3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5'
26799 5' -57.5 NC_005808.1 + 33999 0.67 0.468996
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 26250 0.67 0.468996
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5'
26799 5' -57.5 NC_005808.1 + 19966 0.67 0.478086
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26799 5' -57.5 NC_005808.1 + 19037 0.67 0.489312
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 8180 0.66 0.499623
Target:  5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3'
miRNA:   3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 28863 0.66 0.51003
Target:  5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3'
miRNA:   3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5'
26799 5' -57.5 NC_005808.1 + 20598 0.66 0.531105
Target:  5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3'
miRNA:   3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5'
26799 5' -57.5 NC_005808.1 + 25649 0.66 0.531105
Target:  5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3'
miRNA:   3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5'
26799 5' -57.5 NC_005808.1 + 33191 0.66 0.531105
Target:  5'- cGCCCucGGCAcggCCaCCGCUGGCuAUCG-CGg -3'
miRNA:   3'- -CGGG--UCGUa--GG-GGCGGCUG-UAGUaGC- -5'
26799 5' -57.5 NC_005808.1 + 38008 0.66 0.541762
Target:  5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3'
miRNA:   3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.