miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
268 3' -57.9 AC_000008.1 + 24390 0.7 0.272091
Target:  5'- -gCGGUua--CCAGGuCGGCgGCCGCCa -3'
miRNA:   3'- cgGCCAuucaGGUUC-GUCGgCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 23249 0.7 0.272091
Target:  5'- aGCCGGUccAGGUUgGucuGCAcGuuGCCGCUg -3'
miRNA:   3'- -CGGCCA--UUCAGgUu--CGU-CggCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 3554 0.7 0.271392
Target:  5'- --aGGUGggGGUCUuauguaguuuuguAucuguuuugcAGCAGCCGCCGCCg -3'
miRNA:   3'- cggCCAU--UCAGG-------------U----------UCGUCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 4665 0.71 0.214813
Target:  5'- uGCCGGccucGUCCAgAGagaGGCCGuuGCCc -3'
miRNA:   3'- -CGGCCauu-CAGGU-UCg--UCGGCggCGG- -5'
268 3' -57.9 AC_000008.1 + 17270 0.71 0.214813
Target:  5'- uGCCGc--GGUgCAGGCGGUCGCUGCg -3'
miRNA:   3'- -CGGCcauUCAgGUUCGUCGGCGGCGg -5'
268 3' -57.9 AC_000008.1 + 25078 0.72 0.197617
Target:  5'- cGCgCGGccAGUggCCAaaaaagcuagcgcAGCAGCCGCCGCg -3'
miRNA:   3'- -CG-GCCauUCA--GGU-------------UCGUCGGCGGCGg -5'
268 3' -57.9 AC_000008.1 + 6401 0.72 0.18263
Target:  5'- ---uGUAAGUCCGguAGCGGCgGCCGCg -3'
miRNA:   3'- cggcCAUUCAGGU--UCGUCGgCGGCGg -5'
268 3' -57.9 AC_000008.1 + 10663 0.73 0.163612
Target:  5'- aCCGG--GGUUCGAGCcccguauccGGCCGuCCGCCg -3'
miRNA:   3'- cGGCCauUCAGGUUCG---------UCGGC-GGCGG- -5'
268 3' -57.9 AC_000008.1 + 33679 0.74 0.138418
Target:  5'- gGCCGGcucucGGGuUCCAugGGCucugcuccuGCCGCCGCCg -3'
miRNA:   3'- -CGGCCa----UUC-AGGU--UCGu--------CGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 11462 0.75 0.117163
Target:  5'- aCCGGgauuAGUCCcgcgcgcgcacacguGGCGGCCGCCGaCCu -3'
miRNA:   3'- cGGCCau--UCAGGu--------------UCGUCGGCGGC-GG- -5'
268 3' -57.9 AC_000008.1 + 16310 0.75 0.110045
Target:  5'- uGCCccccAGGUCCAggcgacgAGCGGCCGCCGCa -3'
miRNA:   3'- -CGGcca-UUCAGGU-------UCGUCGGCGGCGg -5'
268 3' -57.9 AC_000008.1 + 19646 0.79 0.063669
Target:  5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAU----------UCAGgUUCG--UCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 23438 0.79 0.060043
Target:  5'- aGCCGGUuGG-CCu-GCGGCUGCUGCCg -3'
miRNA:   3'- -CGGCCAuUCaGGuuCGUCGGCGGCGG- -5'
268 3' -57.9 AC_000008.1 + 26480 1.14 0.000141
Target:  5'- gGCCGGUAAGUCCAAGCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAUUCAGGUUCGUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.