Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
268 | 5' | -52.6 | AC_000008.1 | + | 17374 | 0.67 | 0.648265 |
Target: 5'- cGAGgAAguACGGCGCCGccAGcgcGCUACUg -3' miRNA: 3'- uCUCgUUguUGUCGCGGU--UC---CGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 10341 | 0.67 | 0.647096 |
Target: 5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3' miRNA: 3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 9743 | 0.67 | 0.636569 |
Target: 5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3' miRNA: 3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 6433 | 0.67 | 0.624868 |
Target: 5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3' miRNA: 3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 21863 | 0.68 | 0.613174 |
Target: 5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3' miRNA: 3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16261 | 0.68 | 0.613174 |
Target: 5'- cGGGCGGCcauGCGG-GCCGcucgaAGGCUgGCCg -3' miRNA: 3'- uCUCGUUGu--UGUCgCGGU-----UCCGA-UGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16502 | 0.68 | 0.613174 |
Target: 5'- -cAGCGGCGGCGGCGCgCAAcgaaGCUAUg -3' miRNA: 3'- ucUCGUUGUUGUCGCG-GUUc---CGAUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16848 | 0.68 | 0.601499 |
Target: 5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3' miRNA: 3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 18374 | 0.68 | 0.601499 |
Target: 5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3' miRNA: 3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15186 | 0.68 | 0.577091 |
Target: 5'- aGGAGaAGCGcgcugaggccgaaGCAGCgGCCGAaGCUGCCg -3' miRNA: 3'- -UCUCgUUGU-------------UGUCG-CGGUUcCGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15506 | 0.69 | 0.555199 |
Target: 5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3' miRNA: 3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 21679 | 0.69 | 0.555199 |
Target: 5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3' miRNA: 3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15064 | 0.69 | 0.555199 |
Target: 5'- cGGcAGCAACAGCAGUGgCAGcGGCg--- -3' miRNA: 3'- -UC-UCGUUGUUGUCGCgGUU-CCGaugg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 6696 | 0.69 | 0.555199 |
Target: 5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3' miRNA: 3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 30398 | 0.69 | 0.543773 |
Target: 5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3' miRNA: 3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 9296 | 0.69 | 0.529037 |
Target: 5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3' miRNA: 3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 14187 | 0.69 | 0.521163 |
Target: 5'- gAGAGUGugGugagcGCGGCGCCAGuGGCgGCg -3' miRNA: 3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16710 | 0.69 | 0.521163 |
Target: 5'- cAGGGCGuuguaGGCAGUGCCAgaguaGGGCUuaaaaguaggGCCc -3' miRNA: 3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 8463 | 0.69 | 0.521163 |
Target: 5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3' miRNA: 3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 24136 | 0.69 | 0.509996 |
Target: 5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3' miRNA: 3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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