miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26800 5' -56.9 NC_005808.1 + 38082 1.12 0.000265
Target:  5'- uCUGCGAUGCGCUCAAGCGCCUGUGGCg -3'
miRNA:   3'- -GACGCUACGCGAGUUCGCGGACACCG- -5'
26800 5' -56.9 NC_005808.1 + 29602 0.77 0.109164
Target:  5'- -cGCGGUuugccaguuguccaGCGC-CGGGCGCUUGUGGCc -3'
miRNA:   3'- gaCGCUA--------------CGCGaGUUCGCGGACACCG- -5'
26800 5' -56.9 NC_005808.1 + 16278 0.75 0.150442
Target:  5'- -cGCGGUGCGCgUCAAgaccGUGCCUGUccguugauGGCa -3'
miRNA:   3'- gaCGCUACGCG-AGUU----CGCGGACA--------CCG- -5'
26800 5' -56.9 NC_005808.1 + 42337 0.72 0.226914
Target:  5'- -cGCcGUGC-CUCAAGCGCCUG-GGg -3'
miRNA:   3'- gaCGcUACGcGAGUUCGCGGACaCCg -5'
26800 5' -56.9 NC_005808.1 + 10910 0.71 0.272739
Target:  5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3'
miRNA:   3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5'
26800 5' -56.9 NC_005808.1 + 40584 0.71 0.279861
Target:  5'- -cGCGAcuuCGCcagCGAGCGCCUG-GGCc -3'
miRNA:   3'- gaCGCUac-GCGa--GUUCGCGGACaCCG- -5'
26800 5' -56.9 NC_005808.1 + 32004 0.7 0.31769
Target:  5'- aUGCGGUGCagGCUgc-GCGCCUG-GGUa -3'
miRNA:   3'- gACGCUACG--CGAguuCGCGGACaCCG- -5'
26800 5' -56.9 NC_005808.1 + 12912 0.7 0.325702
Target:  5'- -gGCGAUGCGCUCGGccGCGCCcauaacGCu -3'
miRNA:   3'- gaCGCUACGCGAGUU--CGCGGacac--CG- -5'
26800 5' -56.9 NC_005808.1 + 8536 0.7 0.325702
Target:  5'- -gGCGAUGaaaCGCUCGAcagccGCGCCgaUGGCg -3'
miRNA:   3'- gaCGCUAC---GCGAGUU-----CGCGGacACCG- -5'
26800 5' -56.9 NC_005808.1 + 30082 0.69 0.350633
Target:  5'- uUGUGcgGCGCcCGGGCGCCac-GGCc -3'
miRNA:   3'- gACGCuaCGCGaGUUCGCGGacaCCG- -5'
26800 5' -56.9 NC_005808.1 + 4506 0.69 0.37689
Target:  5'- -cGCGcgGCGCcaCAGGCGCUUGaGcGCa -3'
miRNA:   3'- gaCGCuaCGCGa-GUUCGCGGACaC-CG- -5'
26800 5' -56.9 NC_005808.1 + 28760 0.68 0.395116
Target:  5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3'
miRNA:   3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5'
26800 5' -56.9 NC_005808.1 + 5033 0.68 0.40444
Target:  5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3'
miRNA:   3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5'
26800 5' -56.9 NC_005808.1 + 13928 0.68 0.413902
Target:  5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3'
miRNA:   3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5'
26800 5' -56.9 NC_005808.1 + 35805 0.68 0.413902
Target:  5'- -aGCGAUGCGCaagUCAAgGCGCUgaaccaGGCc -3'
miRNA:   3'- gaCGCUACGCG---AGUU-CGCGGaca---CCG- -5'
26800 5' -56.9 NC_005808.1 + 15137 0.68 0.433228
Target:  5'- gUGCGcgGCGCgcuggCAuaccAGCGCCaG-GGCc -3'
miRNA:   3'- gACGCuaCGCGa----GU----UCGCGGaCaCCG- -5'
26800 5' -56.9 NC_005808.1 + 4376 0.68 0.433228
Target:  5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3'
miRNA:   3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5'
26800 5' -56.9 NC_005808.1 + 7228 0.68 0.433228
Target:  5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3'
miRNA:   3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5'
26800 5' -56.9 NC_005808.1 + 19477 0.67 0.443085
Target:  5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3'
miRNA:   3'- gaCGcuACGCGaGUUCGCGGaCACCg -5'
26800 5' -56.9 NC_005808.1 + 26168 0.67 0.453068
Target:  5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3'
miRNA:   3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.