Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26801 | 5' | -62.8 | NC_005808.1 | + | 18940 | 0.72 | 0.09416 |
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Target: 5'- gGGuCGCCUGGUgcaguUGCuGCcgCCGCCgGCu -3' miRNA: 3'- gCC-GCGGACCG-----ACG-CGuaGGCGGaCG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 9311 | 0.73 | 0.084235 |
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Target: 5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3' miRNA: 3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 13379 | 0.73 | 0.081914 |
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Target: 5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3' miRNA: 3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 39767 | 0.75 | 0.06011 |
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Target: 5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3' miRNA: 3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 17294 | 0.76 | 0.050703 |
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Target: 5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3' miRNA: 3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 13188 | 0.76 | 0.047898 |
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Target: 5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3' miRNA: 3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 5337 | 0.78 | 0.035891 |
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Target: 5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3' miRNA: 3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 42423 | 0.82 | 0.017016 |
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Target: 5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3' miRNA: 3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5' |
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| 26801 | 5' | -62.8 | NC_005808.1 | + | 38223 | 1.1 | 0.000101 |
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Target: 5'- aCGGCGCCUGGCUGCGCAUCCGCCUGCc -3' miRNA: 3'- -GCCGCGGACCGACGCGUAGGCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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