miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 22235 0.7 0.149522
Target:  5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3'
miRNA:   3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 22995 0.68 0.200627
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 23947 0.66 0.259054
Target:  5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3'
miRNA:   3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5'
26801 5' -62.8 NC_005808.1 + 23992 0.7 0.142058
Target:  5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3'
miRNA:   3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5'
26801 5' -62.8 NC_005808.1 + 24161 0.69 0.158184
Target:  5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3'
miRNA:   3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5'
26801 5' -62.8 NC_005808.1 + 24363 0.66 0.286062
Target:  5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3'
miRNA:   3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5'
26801 5' -62.8 NC_005808.1 + 27005 0.66 0.27229
Target:  5'- uGGCcgaUGGCgcgGUGCAUCCGCa-GCg -3'
miRNA:   3'- gCCGcggACCGa--CGCGUAGGCGgaCG- -5'
26801 5' -62.8 NC_005808.1 + 27418 0.68 0.195461
Target:  5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3'
miRNA:   3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27451 0.68 0.205911
Target:  5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3'
miRNA:   3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27743 0.68 0.211316
Target:  5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3'
miRNA:   3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 27842 0.67 0.22249
Target:  5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3'
miRNA:   3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5'
26801 5' -62.8 NC_005808.1 + 27853 0.72 0.09681
Target:  5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3'
miRNA:   3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5'
26801 5' -62.8 NC_005808.1 + 28763 0.7 0.142058
Target:  5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3'
miRNA:   3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5'
26801 5' -62.8 NC_005808.1 + 30473 0.66 0.286062
Target:  5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3'
miRNA:   3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5'
26801 5' -62.8 NC_005808.1 + 31177 0.66 0.286062
Target:  5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3'
miRNA:   3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5'
26801 5' -62.8 NC_005808.1 + 32795 0.71 0.130966
Target:  5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3'
miRNA:   3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 33566 0.7 0.138268
Target:  5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3'
miRNA:   3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 33915 0.69 0.180656
Target:  5'- gCGGCGCacaccugGGC-GCGCAgcagCCG-CUGCa -3'
miRNA:   3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5'
26801 5' -62.8 NC_005808.1 + 37489 0.71 0.130966
Target:  5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3'
miRNA:   3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 38097 0.67 0.240192
Target:  5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3'
miRNA:   3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.