miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 16144 0.71 0.12745
Target:  5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3'
miRNA:   3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5'
26801 5' -62.8 NC_005808.1 + 15360 0.69 0.158184
Target:  5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3'
miRNA:   3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5'
26801 5' -62.8 NC_005808.1 + 15141 0.71 0.12745
Target:  5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3'
miRNA:   3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 14773 0.66 0.258407
Target:  5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3'
miRNA:   3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5'
26801 5' -62.8 NC_005808.1 + 14401 0.67 0.22249
Target:  5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3'
miRNA:   3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 14360 0.68 0.200627
Target:  5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3'
miRNA:   3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 14323 0.66 0.286062
Target:  5'- gCGcGCGCCuUGGCUGaacugCCggGCCUGCu -3'
miRNA:   3'- -GC-CGCGG-ACCGACgcguaGG--CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 13792 0.68 0.188919
Target:  5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3'
miRNA:   3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5'
26801 5' -62.8 NC_005808.1 + 13379 0.73 0.081914
Target:  5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3'
miRNA:   3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5'
26801 5' -62.8 NC_005808.1 + 13188 0.76 0.047898
Target:  5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3'
miRNA:   3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 13016 0.68 0.185477
Target:  5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3'
miRNA:   3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5'
26801 5' -62.8 NC_005808.1 + 12140 0.66 0.27229
Target:  5'- -cGCGCCacgcGCUGCGCuUCCGCguagGCg -3'
miRNA:   3'- gcCGCGGac--CGACGCGuAGGCGga--CG- -5'
26801 5' -62.8 NC_005808.1 + 10110 0.66 0.293153
Target:  5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3'
miRNA:   3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 10059 0.71 0.113929
Target:  5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3'
miRNA:   3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 9311 0.73 0.084235
Target:  5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3'
miRNA:   3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 8601 0.67 0.234165
Target:  5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3'
miRNA:   3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5'
26801 5' -62.8 NC_005808.1 + 8575 0.71 0.12745
Target:  5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3'
miRNA:   3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5'
26801 5' -62.8 NC_005808.1 + 8385 0.69 0.166854
Target:  5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3'
miRNA:   3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5'
26801 5' -62.8 NC_005808.1 + 8157 0.69 0.171346
Target:  5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3'
miRNA:   3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5'
26801 5' -62.8 NC_005808.1 + 6294 0.66 0.27842
Target:  5'- gGGCGCCggGGCUuaucuccggugcGUGCAagacgcggcgcguUCCGCCccaGCc -3'
miRNA:   3'- gCCGCGGa-CCGA------------CGCGU-------------AGGCGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.