Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 5337 | 0.78 | 0.035891 |
Target: 5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3' miRNA: 3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 4515 | 0.66 | 0.27229 |
Target: 5'- gCGGCGCCcgugaacgUGGCgUGCuggGCGgucgugCCGCC-GCg -3' miRNA: 3'- -GCCGCGG--------ACCG-ACG---CGUa-----GGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 3869 | 0.66 | 0.279108 |
Target: 5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3' miRNA: 3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 3700 | 0.68 | 0.195461 |
Target: 5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3' miRNA: 3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 3184 | 0.66 | 0.286062 |
Target: 5'- cCGGCGUCc-GCUGCGUAca-GCUUGCu -3' miRNA: 3'- -GCCGCGGacCGACGCGUaggCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 2341 | 0.67 | 0.228265 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 2243 | 0.67 | 0.216841 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 1647 | 0.68 | 0.211316 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 654 | 0.67 | 0.252636 |
Target: 5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3' miRNA: 3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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