miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 22995 0.68 0.200627
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 1647 0.68 0.211316
Target:  5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3'
miRNA:   3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 22011 0.66 0.288175
Target:  5'- uCGGCGCCUGGCucgaaauagaccgacUuccacgccauguuGCGguCGUCgCGCUUGCu -3'
miRNA:   3'- -GCCGCGGACCG---------------A-------------CGC--GUAG-GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 27842 0.67 0.22249
Target:  5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3'
miRNA:   3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5'
26801 5' -62.8 NC_005808.1 + 20748 0.67 0.228265
Target:  5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3'
miRNA:   3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5'
26801 5' -62.8 NC_005808.1 + 2341 0.67 0.228265
Target:  5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3'
miRNA:   3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 8601 0.67 0.234165
Target:  5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3'
miRNA:   3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5'
26801 5' -62.8 NC_005808.1 + 20617 0.67 0.234165
Target:  5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3'
miRNA:   3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 38097 0.67 0.240192
Target:  5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3'
miRNA:   3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5'
26801 5' -62.8 NC_005808.1 + 654 0.67 0.252636
Target:  5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3'
miRNA:   3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5'
26801 5' -62.8 NC_005808.1 + 21190 0.67 0.22249
Target:  5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3'
miRNA:   3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 39071 0.67 0.216841
Target:  5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5'
26801 5' -62.8 NC_005808.1 + 2243 0.67 0.216841
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26801 5' -62.8 NC_005808.1 + 3869 0.66 0.279108
Target:  5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3'
miRNA:   3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5'
26801 5' -62.8 NC_005808.1 + 14323 0.66 0.286062
Target:  5'- gCGcGCGCCuUGGCUGaacugCCggGCCUGCu -3'
miRNA:   3'- -GC-CGCGG-ACCGACgcguaGG--CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 3184 0.66 0.286062
Target:  5'- cCGGCGUCc-GCUGCGUAca-GCUUGCu -3'
miRNA:   3'- -GCCGCGGacCGACGCGUaggCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 18064 0.66 0.286062
Target:  5'- cCGGCGCg-GGgUGCGUgcugggCCGCCgaagccgGCg -3'
miRNA:   3'- -GCCGCGgaCCgACGCGua----GGCGGa------CG- -5'
26801 5' -62.8 NC_005808.1 + 30473 0.66 0.286062
Target:  5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3'
miRNA:   3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5'
26801 5' -62.8 NC_005808.1 + 24363 0.66 0.286062
Target:  5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3'
miRNA:   3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5'
26801 5' -62.8 NC_005808.1 + 31177 0.66 0.286062
Target:  5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3'
miRNA:   3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.