miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 38223 1.1 0.000101
Target:  5'- aCGGCGCCUGGCUGCGCAUCCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGACGCGUAGGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 42423 0.82 0.017016
Target:  5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3'
miRNA:   3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 5337 0.78 0.035891
Target:  5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3'
miRNA:   3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 13188 0.76 0.047898
Target:  5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3'
miRNA:   3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 17294 0.76 0.050703
Target:  5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3'
miRNA:   3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5'
26801 5' -62.8 NC_005808.1 + 39767 0.75 0.06011
Target:  5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5'
26801 5' -62.8 NC_005808.1 + 13379 0.73 0.081914
Target:  5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3'
miRNA:   3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5'
26801 5' -62.8 NC_005808.1 + 9311 0.73 0.084235
Target:  5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3'
miRNA:   3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 18940 0.72 0.09416
Target:  5'- gGGuCGCCUGGUgcaguUGCuGCcgCCGCCgGCu -3'
miRNA:   3'- gCC-GCGGACCG-----ACG-CGuaGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 27853 0.72 0.09681
Target:  5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3'
miRNA:   3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5'
26801 5' -62.8 NC_005808.1 + 41913 0.72 0.102321
Target:  5'- gGGCGCCcGGCcgGCGCcgCCGUagGCg -3'
miRNA:   3'- gCCGCGGaCCGa-CGCGuaGGCGgaCG- -5'
26801 5' -62.8 NC_005808.1 + 10059 0.71 0.113929
Target:  5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3'
miRNA:   3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 15141 0.71 0.12745
Target:  5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3'
miRNA:   3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 16144 0.71 0.12745
Target:  5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3'
miRNA:   3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5'
26801 5' -62.8 NC_005808.1 + 8575 0.71 0.12745
Target:  5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3'
miRNA:   3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5'
26801 5' -62.8 NC_005808.1 + 32795 0.71 0.130966
Target:  5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3'
miRNA:   3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 37489 0.71 0.130966
Target:  5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3'
miRNA:   3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 33566 0.7 0.138268
Target:  5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3'
miRNA:   3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 23992 0.7 0.142058
Target:  5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3'
miRNA:   3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5'
26801 5' -62.8 NC_005808.1 + 28763 0.7 0.142058
Target:  5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3'
miRNA:   3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.