miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26801 5' -62.8 NC_005808.1 + 39071 0.67 0.216841
Target:  5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5'
26801 5' -62.8 NC_005808.1 + 2243 0.67 0.216841
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26801 5' -62.8 NC_005808.1 + 23992 0.7 0.142058
Target:  5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3'
miRNA:   3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5'
26801 5' -62.8 NC_005808.1 + 32795 0.71 0.130966
Target:  5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3'
miRNA:   3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 37489 0.71 0.130966
Target:  5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3'
miRNA:   3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 8575 0.71 0.12745
Target:  5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3'
miRNA:   3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5'
26801 5' -62.8 NC_005808.1 + 9311 0.73 0.084235
Target:  5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3'
miRNA:   3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 39767 0.75 0.06011
Target:  5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5'
26801 5' -62.8 NC_005808.1 + 17294 0.76 0.050703
Target:  5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3'
miRNA:   3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5'
26801 5' -62.8 NC_005808.1 + 13188 0.76 0.047898
Target:  5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3'
miRNA:   3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 22235 0.7 0.149522
Target:  5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3'
miRNA:   3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5'
26801 5' -62.8 NC_005808.1 + 15360 0.69 0.158184
Target:  5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3'
miRNA:   3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5'
26801 5' -62.8 NC_005808.1 + 1647 0.68 0.211316
Target:  5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3'
miRNA:   3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5'
26801 5' -62.8 NC_005808.1 + 22995 0.68 0.200627
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26801 5' -62.8 NC_005808.1 + 14360 0.68 0.200627
Target:  5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3'
miRNA:   3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5'
26801 5' -62.8 NC_005808.1 + 27418 0.68 0.195461
Target:  5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3'
miRNA:   3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5'
26801 5' -62.8 NC_005808.1 + 33915 0.69 0.180656
Target:  5'- gCGGCGCacaccugGGC-GCGCAgcagCCG-CUGCa -3'
miRNA:   3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5'
26801 5' -62.8 NC_005808.1 + 8157 0.69 0.171346
Target:  5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3'
miRNA:   3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5'
26801 5' -62.8 NC_005808.1 + 8385 0.69 0.166854
Target:  5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3'
miRNA:   3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5'
26801 5' -62.8 NC_005808.1 + 24161 0.69 0.158184
Target:  5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3'
miRNA:   3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.