miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 3' -50.1 NC_005808.1 + 38334 1.1 0.002008
Target:  5'- gGAAAUGGUCACGCCUCAAGACCUACGg -3'
miRNA:   3'- -CUUUACCAGUGCGGAGUUCUGGAUGC- -5'
26802 3' -50.1 NC_005808.1 + 31160 0.7 0.677824
Target:  5'- ----gGuGUCGCGCCUUAucggcGACCUGCa -3'
miRNA:   3'- cuuuaC-CAGUGCGGAGUu----CUGGAUGc -5'
26802 3' -50.1 NC_005808.1 + 35256 0.69 0.778256
Target:  5'- ----aGGUCGaggcCGCgCUCAAGGCCaUGCGu -3'
miRNA:   3'- cuuuaCCAGU----GCG-GAGUUCUGG-AUGC- -5'
26802 3' -50.1 NC_005808.1 + 19084 0.68 0.799056
Target:  5'- ----aGGUCACGCgauugCAGGccgGCCUGCGa -3'
miRNA:   3'- cuuuaCCAGUGCGga---GUUC---UGGAUGC- -5'
26802 3' -50.1 NC_005808.1 + 8615 0.68 0.809169
Target:  5'- ---cUGGUUGCGCUUCucGGCCgcUGCGg -3'
miRNA:   3'- cuuuACCAGUGCGGAGuuCUGG--AUGC- -5'
26802 3' -50.1 NC_005808.1 + 29097 0.68 0.809169
Target:  5'- ----aGGUCAgGCCcgugCGGGACUUGCu -3'
miRNA:   3'- cuuuaCCAGUgCGGa---GUUCUGGAUGc -5'
26802 3' -50.1 NC_005808.1 + 13920 0.67 0.847422
Target:  5'- cGAcGUGG-CGCGCCgcgcuggCGAGGCCgccgGCa -3'
miRNA:   3'- -CUuUACCaGUGCGGa------GUUCUGGa---UGc -5'
26802 3' -50.1 NC_005808.1 + 25493 0.67 0.865073
Target:  5'- --cGUGGUCAaGCCcCAAGGCCcgGCc -3'
miRNA:   3'- cuuUACCAGUgCGGaGUUCUGGa-UGc -5'
26802 3' -50.1 NC_005808.1 + 21386 0.67 0.856379
Target:  5'- -cAAUGG-CGCGCU---GGGCCUGCGc -3'
miRNA:   3'- cuUUACCaGUGCGGaguUCUGGAUGC- -5'
26802 3' -50.1 NC_005808.1 + 14316 0.67 0.838211
Target:  5'- uGAAcUGGcgCGCGCCUUGgcugaacugccGGGCCUGCu -3'
miRNA:   3'- -CUUuACCa-GUGCGGAGU-----------UCUGGAUGc -5'
26802 3' -50.1 NC_005808.1 + 33162 0.67 0.838211
Target:  5'- --cGUGGaCGCGaCCaacgacgcuauUCAAGACCUGCa -3'
miRNA:   3'- cuuUACCaGUGC-GG-----------AGUUCUGGAUGc -5'
26802 3' -50.1 NC_005808.1 + 29124 0.66 0.897054
Target:  5'- ----cGGUCACGCgCgCGAGGCC-GCa -3'
miRNA:   3'- cuuuaCCAGUGCG-GaGUUCUGGaUGc -5'
26802 3' -50.1 NC_005808.1 + 24549 0.66 0.884814
Target:  5'- --cGUGGUCGCGCagcgcggcgauggCGAGGCCggccACGg -3'
miRNA:   3'- cuuUACCAGUGCGga-----------GUUCUGGa---UGC- -5'
26802 3' -50.1 NC_005808.1 + 26333 0.66 0.881637
Target:  5'- cGGGUGGcCGCGCg-CGAGGCCaACGc -3'
miRNA:   3'- cUUUACCaGUGCGgaGUUCUGGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.