miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 12836 0.65 0.531624
Target:  5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3'
miRNA:   3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5'
26802 5' -57.3 NC_005808.1 + 9684 0.66 0.480905
Target:  5'- --aGCcAGCCguGCAGGCCGUGGCc-GCa -3'
miRNA:   3'- augCGuUCGG--CGUUCGGCGCUGcaCG- -5'
26802 5' -57.3 NC_005808.1 + 37446 0.66 0.523026
Target:  5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3'
miRNA:   3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5'
26802 5' -57.3 NC_005808.1 + 24880 0.66 0.491288
Target:  5'- aUGCGCGcAGCUu---GCCGCGAUGgGCa -3'
miRNA:   3'- -AUGCGU-UCGGcguuCGGCGCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 31296 0.66 0.501772
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26802 5' -57.3 NC_005808.1 + 6281 0.66 0.523026
Target:  5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3'
miRNA:   3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 41628 0.66 0.480905
Target:  5'- gGCgGCcaaguGGCUGCAAGCUGCcGugG-GCa -3'
miRNA:   3'- aUG-CGu----UCGGCGUUCGGCG-CugCaCG- -5'
26802 5' -57.3 NC_005808.1 + 14269 0.66 0.523026
Target:  5'- gUugGCcuGCUGCAccauGCUGuCGGCGaUGCg -3'
miRNA:   3'- -AugCGuuCGGCGUu---CGGC-GCUGC-ACG- -5'
26802 5' -57.3 NC_005808.1 + 12007 0.66 0.512353
Target:  5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3'
miRNA:   3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5'
26802 5' -57.3 NC_005808.1 + 25205 0.66 0.501772
Target:  5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3'
miRNA:   3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5'
26802 5' -57.3 NC_005808.1 + 18454 0.66 0.491288
Target:  5'- aACGUGacGGUCGCGGcGCCGgCGGCGUcgGCc -3'
miRNA:   3'- aUGCGU--UCGGCGUU-CGGC-GCUGCA--CG- -5'
26802 5' -57.3 NC_005808.1 + 40011 0.66 0.480905
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 9721 0.66 0.512353
Target:  5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3'
miRNA:   3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5'
26802 5' -57.3 NC_005808.1 + 4922 0.66 0.512353
Target:  5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3'
miRNA:   3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5'
26802 5' -57.3 NC_005808.1 + 12626 0.66 0.480905
Target:  5'- gGCuGCAuccaGGCCGUcgugcGCCGCGACGacaaGCa -3'
miRNA:   3'- aUG-CGU----UCGGCGuu---CGGCGCUGCa---CG- -5'
26802 5' -57.3 NC_005808.1 + 34905 0.66 0.480905
Target:  5'- --gGCAAGCCGgccgccgagguCAAGCCGaCGACcugGCc -3'
miRNA:   3'- augCGUUCGGC-----------GUUCGGC-GCUGca-CG- -5'
26802 5' -57.3 NC_005808.1 + 8619 0.66 0.501772
Target:  5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3'
miRNA:   3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 3155 0.66 0.491288
Target:  5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3'
miRNA:   3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5'
26802 5' -57.3 NC_005808.1 + 18042 0.66 0.501772
Target:  5'- --gGCGGGCUGCuuggGGGCCuuaccggcGCGGgGUGCg -3'
miRNA:   3'- augCGUUCGGCG----UUCGG--------CGCUgCACG- -5'
26802 5' -57.3 NC_005808.1 + 39775 0.66 0.490244
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.