miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 12836 0.65 0.531624
Target:  5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3'
miRNA:   3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5'
26802 5' -57.3 NC_005808.1 + 19595 0.66 0.523026
Target:  5'- gGCGC-AGCaGCAGGCCGaccaGGCGaaaGCc -3'
miRNA:   3'- aUGCGuUCGgCGUUCGGCg---CUGCa--CG- -5'
26802 5' -57.3 NC_005808.1 + 6281 0.66 0.523026
Target:  5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3'
miRNA:   3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 9506 0.66 0.523026
Target:  5'- aUGgGCGAGgaUGUAGGCCGCcGCGUcGCu -3'
miRNA:   3'- -AUgCGUUCg-GCGUUCGGCGcUGCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 37312 0.66 0.523026
Target:  5'- gACGCcguGGCCGaCAAcGCCGCGAacaucaacaCGgugGCc -3'
miRNA:   3'- aUGCGu--UCGGC-GUU-CGGCGCU---------GCa--CG- -5'
26802 5' -57.3 NC_005808.1 + 14269 0.66 0.523026
Target:  5'- gUugGCcuGCUGCAccauGCUGuCGGCGaUGCg -3'
miRNA:   3'- -AugCGuuCGGCGUu---CGGC-GCUGC-ACG- -5'
26802 5' -57.3 NC_005808.1 + 37446 0.66 0.523026
Target:  5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3'
miRNA:   3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5'
26802 5' -57.3 NC_005808.1 + 14043 0.66 0.523026
Target:  5'- cGCGCcgcgauGGCCGgcGGCCGCaagguCGUGCc -3'
miRNA:   3'- aUGCGu-----UCGGCguUCGGCGcu---GCACG- -5'
26802 5' -57.3 NC_005808.1 + 8544 0.66 0.523026
Target:  5'- aACGCucgacAGCCGC--GCCGaUGGCGgGCa -3'
miRNA:   3'- aUGCGu----UCGGCGuuCGGC-GCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 18634 0.66 0.518746
Target:  5'- cGCGCAugaaucggcaaauGCCGaccucGCCG-GGCGUGCg -3'
miRNA:   3'- aUGCGUu------------CGGCguu--CGGCgCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 12007 0.66 0.512353
Target:  5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3'
miRNA:   3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5'
26802 5' -57.3 NC_005808.1 + 4381 0.66 0.512353
Target:  5'- aUGCGCAGccaggcGCCGuCGcGCCGgGccuugaGCGUGCg -3'
miRNA:   3'- -AUGCGUU------CGGC-GUuCGGCgC------UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 4922 0.66 0.512353
Target:  5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3'
miRNA:   3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5'
26802 5' -57.3 NC_005808.1 + 9721 0.66 0.512353
Target:  5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3'
miRNA:   3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5'
26802 5' -57.3 NC_005808.1 + 25009 0.66 0.512353
Target:  5'- aACGCGcAGCCGUuuAGCUGCGAaaucgacaacacCG-GCg -3'
miRNA:   3'- aUGCGU-UCGGCGu-UCGGCGCU------------GCaCG- -5'
26802 5' -57.3 NC_005808.1 + 37798 0.66 0.512353
Target:  5'- --aGCAAucCCGCAGcGCCaGcCGGCGUGCu -3'
miRNA:   3'- augCGUUc-GGCGUU-CGG-C-GCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 13725 0.66 0.512353
Target:  5'- cUACGCcAGCaGCGAGgaCGUGGCGcgGCg -3'
miRNA:   3'- -AUGCGuUCGgCGUUCg-GCGCUGCa-CG- -5'
26802 5' -57.3 NC_005808.1 + 31296 0.66 0.501772
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26802 5' -57.3 NC_005808.1 + 8619 0.66 0.501772
Target:  5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3'
miRNA:   3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5'
26802 5' -57.3 NC_005808.1 + 32787 0.66 0.501772
Target:  5'- aUGCGCAAacGCUGCuugacuGGUU-CGGCGUGCg -3'
miRNA:   3'- -AUGCGUU--CGGCGu-----UCGGcGCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.