miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 5319 0.79 0.075371
Target:  5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3'
miRNA:   3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5'
26802 5' -57.3 NC_005808.1 + 18342 0.7 0.29296
Target:  5'- cACGCucaAGGUgGCAAGCCGCGAgGa-- -3'
miRNA:   3'- aUGCG---UUCGgCGUUCGGCGCUgCacg -5'
26802 5' -57.3 NC_005808.1 + 23901 0.7 0.285595
Target:  5'- aUGCGCu-GCUGCugaccgAGGcCCGCGugGUGUa -3'
miRNA:   3'- -AUGCGuuCGGCG------UUC-GGCGCugCACG- -5'
26802 5' -57.3 NC_005808.1 + 14895 0.72 0.214045
Target:  5'- gGCgGCGAGCCGCugccGGCgCGCGGCcUGUa -3'
miRNA:   3'- aUG-CGUUCGGCGu---UCG-GCGCUGcACG- -5'
26802 5' -57.3 NC_005808.1 + 9170 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 18683 0.69 0.348656
Target:  5'- cACGCcuauGCCgGCAuggaAGCCGCGgGCGUGg -3'
miRNA:   3'- aUGCGuu--CGG-CGU----UCGGCGC-UGCACg -5'
26802 5' -57.3 NC_005808.1 + 21420 0.7 0.295947
Target:  5'- aGCaGCAGGCCGCGcagcaGGCCGCGcuguugaaccagggcGCGgacacgGCg -3'
miRNA:   3'- aUG-CGUUCGGCGU-----UCGGCGC---------------UGCa-----CG- -5'
26802 5' -57.3 NC_005808.1 + 40361 0.73 0.197398
Target:  5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3'
miRNA:   3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5'
26802 5' -57.3 NC_005808.1 + 35050 0.72 0.231883
Target:  5'- gUACGacccGGCCGCGAGCCa--GCGUGCg -3'
miRNA:   3'- -AUGCgu--UCGGCGUUCGGcgcUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 4426 0.72 0.219857
Target:  5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3'
miRNA:   3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 4200 0.73 0.186937
Target:  5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3'
miRNA:   3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5'
26802 5' -57.3 NC_005808.1 + 12461 0.73 0.181892
Target:  5'- gACGCGG--UGCAGGCCgGCGGCGUGUu -3'
miRNA:   3'- aUGCGUUcgGCGUUCGG-CGCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 21214 0.69 0.357203
Target:  5'- cGCGCAGGCCcaGCGcGCCauuGCGACGa-- -3'
miRNA:   3'- aUGCGUUCGG--CGUuCGG---CGCUGCacg -5'
26802 5' -57.3 NC_005808.1 + 13139 0.69 0.356342
Target:  5'- cGCGCuucGUCGCcuggugccagGAGCaccugggCGCGACGUGCg -3'
miRNA:   3'- aUGCGuu-CGGCG----------UUCG-------GCGCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 17012 0.7 0.285595
Target:  5'- -cUGCcuGGGCCGCAGaCCGCGGCGUa- -3'
miRNA:   3'- auGCG--UUCGGCGUUcGGCGCUGCAcg -5'
26802 5' -57.3 NC_005808.1 + 9314 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 9218 0.72 0.201179
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26802 5' -57.3 NC_005808.1 + 18126 0.74 0.167474
Target:  5'- gGCGCAGGCCaagcaGCAGGUCGuCGGCGUc- -3'
miRNA:   3'- aUGCGUUCGG-----CGUUCGGC-GCUGCAcg -5'
26802 5' -57.3 NC_005808.1 + 33268 0.72 0.214045
Target:  5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 28469 0.72 0.231883
Target:  5'- aAgGCAAGCCGCuGGCCGaCGAguaCG-GCg -3'
miRNA:   3'- aUgCGUUCGGCGuUCGGC-GCU---GCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.