miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26802 5' -57.3 NC_005808.1 + 19030 0.67 0.440504
Target:  5'- gUGCGguAGCCcugGUAgcGGCCGCcGGCG-GCg -3'
miRNA:   3'- -AUGCguUCGG---CGU--UCGGCG-CUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 24555 0.67 0.444458
Target:  5'- cGCGCAgcgcggcgauggcgaGGCCGgccacgguCGGGCCGUccGGCGUGUc -3'
miRNA:   3'- aUGCGU---------------UCGGC--------GUUCGGCG--CUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 34388 0.67 0.450427
Target:  5'- cGCGCAcgaacuGGCCGCcauGUCGCuGACGaacggGCa -3'
miRNA:   3'- aUGCGU------UCGGCGuu-CGGCG-CUGCa----CG- -5'
26802 5' -57.3 NC_005808.1 + 26827 0.67 0.460471
Target:  5'- uUugGCAGGCUGCGccGCCcCGAUGgagcggGCg -3'
miRNA:   3'- -AugCGUUCGGCGUu-CGGcGCUGCa-----CG- -5'
26802 5' -57.3 NC_005808.1 + 32832 0.67 0.460471
Target:  5'- cUACaCcAGCCGCAacggcuucgccuGGCCGCaGACGgucgGCg -3'
miRNA:   3'- -AUGcGuUCGGCGU------------UCGGCG-CUGCa---CG- -5'
26802 5' -57.3 NC_005808.1 + 19495 0.67 0.460471
Target:  5'- gUGgGCAGGCCGCugcgaaCCGUGGucuUGUGCu -3'
miRNA:   3'- -AUgCGUUCGGCGuuc---GGCGCU---GCACG- -5'
26802 5' -57.3 NC_005808.1 + 37264 0.67 0.460471
Target:  5'- aGCGCGAuGCCau--GCUGCGccACGUGCu -3'
miRNA:   3'- aUGCGUU-CGGcguuCGGCGC--UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 8392 0.67 0.460471
Target:  5'- cGCGCuGGCUGCGuagccagucGGCCaGgGcCGUGCg -3'
miRNA:   3'- aUGCGuUCGGCGU---------UCGG-CgCuGCACG- -5'
26802 5' -57.3 NC_005808.1 + 38191 0.67 0.46961
Target:  5'- cUACGacuGCCGCAcgcucaaGGCCcggcGCGACG-GCg -3'
miRNA:   3'- -AUGCguuCGGCGU-------UCGG----CGCUGCaCG- -5'
26802 5' -57.3 NC_005808.1 + 26530 0.67 0.470632
Target:  5'- cUACGgc-GCCGCGcGCgGCGgccACGUGCg -3'
miRNA:   3'- -AUGCguuCGGCGUuCGgCGC---UGCACG- -5'
26802 5' -57.3 NC_005808.1 + 5012 0.67 0.42104
Target:  5'- gGCGCAGuCCGCuuucagcGCCGCGAUGccccGCu -3'
miRNA:   3'- aUGCGUUcGGCGuu-----CGGCGCUGCa---CG- -5'
26802 5' -57.3 NC_005808.1 + 41565 0.67 0.429735
Target:  5'- cAUGCu-GCCGCcGGCCGUGGCcuuccagGUGUu -3'
miRNA:   3'- aUGCGuuCGGCGuUCGGCGCUG-------CACG- -5'
26802 5' -57.3 NC_005808.1 + 40227 0.67 0.430707
Target:  5'- cACGCGGGCgucugccacgUGCAGGCCgaauuGCGGCGcacGCg -3'
miRNA:   3'- aUGCGUUCG----------GCGUUCGG-----CGCUGCa--CG- -5'
26802 5' -57.3 NC_005808.1 + 8937 0.67 0.450427
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26802 5' -57.3 NC_005808.1 + 19933 0.67 0.450427
Target:  5'- cUGCGCAccgAGCgCGaAAGCUG-GAUGUGCa -3'
miRNA:   3'- -AUGCGU---UCG-GCgUUCGGCgCUGCACG- -5'
26802 5' -57.3 NC_005808.1 + 17397 0.67 0.460471
Target:  5'- aGC-CGGGCCaGC-GGUCGCG-CGUGCu -3'
miRNA:   3'- aUGcGUUCGG-CGuUCGGCGCuGCACG- -5'
26802 5' -57.3 NC_005808.1 + 5242 0.68 0.402103
Target:  5'- cGCGCAguucGGCCgGCAGGUCGgGGuCG-GCa -3'
miRNA:   3'- aUGCGU----UCGG-CGUUCGGCgCU-GCaCG- -5'
26802 5' -57.3 NC_005808.1 + 20754 0.68 0.365897
Target:  5'- cUGCGCAAGgCGCAGGCCauCGACu--- -3'
miRNA:   3'- -AUGCGUUCgGCGUUCGGc-GCUGcacg -5'
26802 5' -57.3 NC_005808.1 + 21272 0.68 0.365897
Target:  5'- gGCGCGguGGCCGgcauCAAGCC-CGAaGUGCu -3'
miRNA:   3'- aUGCGU--UCGGC----GUUCGGcGCUgCACG- -5'
26802 5' -57.3 NC_005808.1 + 24947 0.68 0.365897
Target:  5'- gACGCAucaagaucguGGCCGUAcuGCCGC-ACGaUGCg -3'
miRNA:   3'- aUGCGU----------UCGGCGUu-CGGCGcUGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.