miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26803 5' -58.6 NC_005808.1 + 29027 0.66 0.461823
Target:  5'- uGGCgAGCGCGcguucaacaUCGCCGUGGgcaccGAgUCa -3'
miRNA:   3'- cCCG-UCGCGC---------AGCGGCACCac---CUaAG- -5'
26803 5' -58.6 NC_005808.1 + 27791 0.66 0.461823
Target:  5'- aGGCAGCGC--CGCCGaGGUGcaGGUUUc -3'
miRNA:   3'- cCCGUCGCGcaGCGGCaCCAC--CUAAG- -5'
26803 5' -58.6 NC_005808.1 + 4105 0.66 0.460831
Target:  5'- uGGGCGGCGCugaauucGUCGCgGUcGUcGGcUUCg -3'
miRNA:   3'- -CCCGUCGCG-------CAGCGgCAcCA-CCuAAG- -5'
26803 5' -58.6 NC_005808.1 + 41801 0.66 0.442209
Target:  5'- gGGcGCGGCGCGUCGCCGg--------- -3'
miRNA:   3'- -CC-CGUCGCGCAGCGGCaccaccuaag -5'
26803 5' -58.6 NC_005808.1 + 4539 0.67 0.404445
Target:  5'- uGGGCGGuCGUGcCGCCGcGGaacUGGAc-- -3'
miRNA:   3'- -CCCGUC-GCGCaGCGGCaCC---ACCUaag -5'
26803 5' -58.6 NC_005808.1 + 31944 0.67 0.386343
Target:  5'- cGGCGGCGCGUuucaCGCCGcaGGUGa---- -3'
miRNA:   3'- cCCGUCGCGCA----GCGGCa-CCACcuaag -5'
26803 5' -58.6 NC_005808.1 + 25090 0.7 0.282274
Target:  5'- -cGCAGCGCGcccggCGCCGUGGgauacagcGGGUg- -3'
miRNA:   3'- ccCGUCGCGCa----GCGGCACCa-------CCUAag -5'
26803 5' -58.6 NC_005808.1 + 13926 0.7 0.248599
Target:  5'- aGGGCGauGuCGCGcagCGCCGUGGacUGGAUg- -3'
miRNA:   3'- -CCCGU--C-GCGCa--GCGGCACC--ACCUAag -5'
26803 5' -58.6 NC_005808.1 + 5472 0.72 0.19124
Target:  5'- cGGGCGGCGagguGUUGCCGaUGGgGGGUa- -3'
miRNA:   3'- -CCCGUCGCg---CAGCGGC-ACCaCCUAag -5'
26803 5' -58.6 NC_005808.1 + 3821 0.75 0.130587
Target:  5'- uGGGCAgGCGC-UUGCCGUGGUGag-UCa -3'
miRNA:   3'- -CCCGU-CGCGcAGCGGCACCACcuaAG- -5'
26803 5' -58.6 NC_005808.1 + 38906 1.03 0.000943
Target:  5'- gGGGCAGCGCGUCGCCG-GGUGGAUUCg -3'
miRNA:   3'- -CCCGUCGCGCAGCGGCaCCACCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.