miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26805 5' -63.5 NC_005808.1 + 21885 0.66 0.273514
Target:  5'- -cGGCCUGauggggugcCCGUGCCUcgUCGUCCagCCCa -3'
miRNA:   3'- uaCUGGGC---------GGCGCGGA--AGCAGG--GGGc -5'
26805 5' -63.5 NC_005808.1 + 40616 0.66 0.273514
Target:  5'- -cGACCuCG-CGCGCCUacagCGugccuUCCCCCa -3'
miRNA:   3'- uaCUGG-GCgGCGCGGAa---GC-----AGGGGGc -5'
26805 5' -63.5 NC_005808.1 + 20787 0.66 0.26622
Target:  5'- --aACCCGCCGCugcaacuGCCggUGUCCgCCa -3'
miRNA:   3'- uacUGGGCGGCG-------CGGaaGCAGGgGGc -5'
26805 5' -63.5 NC_005808.1 + 32115 0.66 0.247747
Target:  5'- --cGCCCugGCCGCuGCCgaccUCGacgCCCCCGa -3'
miRNA:   3'- uacUGGG--CGGCG-CGGa---AGCa--GGGGGC- -5'
26805 5' -63.5 NC_005808.1 + 34023 0.67 0.241627
Target:  5'- cGUGACCgucgUGUCGCGCCUgUCGcugCCCgCCa -3'
miRNA:   3'- -UACUGG----GCGGCGCGGA-AGCa--GGG-GGc -5'
26805 5' -63.5 NC_005808.1 + 1760 0.67 0.224022
Target:  5'- cAUGGCCgGCCuGCGCCUggcgCGUCgggCCGa -3'
miRNA:   3'- -UACUGGgCGG-CGCGGAa---GCAGgg-GGC- -5'
26805 5' -63.5 NC_005808.1 + 13537 0.68 0.192076
Target:  5'- gAUGACCCGCUGaugGCCUaCGagCCgCCGg -3'
miRNA:   3'- -UACUGGGCGGCg--CGGAaGCa-GGgGGC- -5'
26805 5' -63.5 NC_005808.1 + 11835 0.69 0.167691
Target:  5'- -aGACCgGCCGCGCCgcggUUGgccugggcgaaCCCCGc -3'
miRNA:   3'- uaCUGGgCGGCGCGGa---AGCag---------GGGGC- -5'
26805 5' -63.5 NC_005808.1 + 25308 0.69 0.155741
Target:  5'- gAUGcgcGCCCGCgGCGCCggcuUCGUggacggcaauaUCCCCGg -3'
miRNA:   3'- -UAC---UGGGCGgCGCGGa---AGCA-----------GGGGGC- -5'
26805 5' -63.5 NC_005808.1 + 13923 0.7 0.132697
Target:  5'- cGUGGCgCGCCGCGCUggCGaggCCgCCGg -3'
miRNA:   3'- -UACUGgGCGGCGCGGaaGCa--GGgGGC- -5'
26805 5' -63.5 NC_005808.1 + 13130 0.71 0.115938
Target:  5'- --aACUgGCCGCGCgCUUCGUCgCCUGg -3'
miRNA:   3'- uacUGGgCGGCGCG-GAAGCAGgGGGC- -5'
26805 5' -63.5 NC_005808.1 + 33276 0.72 0.090653
Target:  5'- --cGCCCGCCGCGCCgaCGUgCgCCGc -3'
miRNA:   3'- uacUGGGCGGCGCGGaaGCAgGgGGC- -5'
26805 5' -63.5 NC_005808.1 + 39597 1.05 0.000228
Target:  5'- uAUGACCCGCCGCGCCUUCGUCCCCCGu -3'
miRNA:   3'- -UACUGGGCGGCGCGGAAGCAGGGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.