miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26806 3' -62.4 NC_005808.1 + 9316 0.66 0.268276
Target:  5'- gACcuGGCGGCGcacgucGGCGCG-GCGgGCGg -3'
miRNA:   3'- -UGucCCGCCGU------UCGCGCgCGUgCGCg -5'
26806 3' -62.4 NC_005808.1 + 40015 1.1 0.000116
Target:  5'- aACAGGGCGGCAAGCGCGCGCACGCGCu -3'
miRNA:   3'- -UGUCCCGCCGUUCGCGCGCGUGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 31022 0.66 0.303398
Target:  5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3'
miRNA:   3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 31106 0.66 0.303398
Target:  5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3'
miRNA:   3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5'
26806 3' -62.4 NC_005808.1 + 14412 0.66 0.2961
Target:  5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3'
miRNA:   3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5'
26806 3' -62.4 NC_005808.1 + 8574 0.66 0.2961
Target:  5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3'
miRNA:   3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5'
26806 3' -62.4 NC_005808.1 + 29567 0.66 0.2961
Target:  5'- uCGGGGUaucgcgucaGGUcGGC-CGCGCccagGCGCGCg -3'
miRNA:   3'- uGUCCCG---------CCGuUCGcGCGCG----UGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 19856 0.66 0.2961
Target:  5'- aGCAGcGUGGUGAGUucggGCGUGCcgaaggcgucGCGCGCc -3'
miRNA:   3'- -UGUCcCGCCGUUCG----CGCGCG----------UGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 28756 0.66 0.28894
Target:  5'- cCAGcGCGGUGcgcuucucGGCGCGCacgGCGuCGCGCu -3'
miRNA:   3'- uGUCcCGCCGU--------UCGCGCG---CGU-GCGCG- -5'
26806 3' -62.4 NC_005808.1 + 27770 0.66 0.284709
Target:  5'- --cGucCGGCucggacacguacacgAAGCGCGCGC-CGCGCa -3'
miRNA:   3'- uguCccGCCG---------------UUCGCGCGCGuGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 2406 0.82 0.019783
Target:  5'- uCAGGGCGGCAAGCGUagGUGUACG-GCa -3'
miRNA:   3'- uGUCCCGCCGUUCGCG--CGCGUGCgCG- -5'
26806 3' -62.4 NC_005808.1 + 21460 0.67 0.261658
Target:  5'- -gGGGGCGGCAGGaUGUugGCcucgacCAUGCGCu -3'
miRNA:   3'- ugUCCCGCCGUUC-GCG--CGc-----GUGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 37249 0.67 0.261658
Target:  5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3'
miRNA:   3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 27437 0.67 0.255174
Target:  5'- cGCccGGCGGCcgcaggcccuGGCGCugguaugccaGCGCGcCGCGCa -3'
miRNA:   3'- -UGucCCGCCGu---------UCGCG----------CGCGU-GCGCG- -5'
26806 3' -62.4 NC_005808.1 + 4512 0.67 0.248822
Target:  5'- --cGGGCGGCGcccgugaacguGGCGUgcuggGCGguCGUGCc -3'
miRNA:   3'- uguCCCGCCGU-----------UCGCG-----CGCguGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 42416 0.67 0.248194
Target:  5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3'
miRNA:   3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5'
26806 3' -62.4 NC_005808.1 + 41197 0.67 0.241986
Target:  5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3'
miRNA:   3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5'
26806 3' -62.4 NC_005808.1 + 16935 0.67 0.236511
Target:  5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3'
miRNA:   3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5'
26806 3' -62.4 NC_005808.1 + 25070 0.67 0.230548
Target:  5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3'
miRNA:   3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5'
26806 3' -62.4 NC_005808.1 + 8143 0.68 0.224714
Target:  5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3'
miRNA:   3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.