Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26806 | 3' | -62.4 | NC_005808.1 | + | 9316 | 0.66 | 0.268276 |
Target: 5'- gACcuGGCGGCGcacgucGGCGCG-GCGgGCGg -3' miRNA: 3'- -UGucCCGCCGU------UCGCGCgCGUgCGCg -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 40015 | 1.1 | 0.000116 |
Target: 5'- aACAGGGCGGCAAGCGCGCGCACGCGCu -3' miRNA: 3'- -UGUCCCGCCGUUCGCGCGCGUGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 31022 | 0.66 | 0.303398 |
Target: 5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3' miRNA: 3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 31106 | 0.66 | 0.303398 |
Target: 5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3' miRNA: 3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 14412 | 0.66 | 0.2961 |
Target: 5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3' miRNA: 3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 8574 | 0.66 | 0.2961 |
Target: 5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3' miRNA: 3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 29567 | 0.66 | 0.2961 |
Target: 5'- uCGGGGUaucgcgucaGGUcGGC-CGCGCccagGCGCGCg -3' miRNA: 3'- uGUCCCG---------CCGuUCGcGCGCG----UGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 19856 | 0.66 | 0.2961 |
Target: 5'- aGCAGcGUGGUGAGUucggGCGUGCcgaaggcgucGCGCGCc -3' miRNA: 3'- -UGUCcCGCCGUUCG----CGCGCG----------UGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 28756 | 0.66 | 0.28894 |
Target: 5'- cCAGcGCGGUGcgcuucucGGCGCGCacgGCGuCGCGCu -3' miRNA: 3'- uGUCcCGCCGU--------UCGCGCG---CGU-GCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 27770 | 0.66 | 0.284709 |
Target: 5'- --cGucCGGCucggacacguacacgAAGCGCGCGC-CGCGCa -3' miRNA: 3'- uguCccGCCG---------------UUCGCGCGCGuGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 2406 | 0.82 | 0.019783 |
Target: 5'- uCAGGGCGGCAAGCGUagGUGUACG-GCa -3' miRNA: 3'- uGUCCCGCCGUUCGCG--CGCGUGCgCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 21460 | 0.67 | 0.261658 |
Target: 5'- -gGGGGCGGCAGGaUGUugGCcucgacCAUGCGCu -3' miRNA: 3'- ugUCCCGCCGUUC-GCG--CGc-----GUGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 37249 | 0.67 | 0.261658 |
Target: 5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3' miRNA: 3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 27437 | 0.67 | 0.255174 |
Target: 5'- cGCccGGCGGCcgcaggcccuGGCGCugguaugccaGCGCGcCGCGCa -3' miRNA: 3'- -UGucCCGCCGu---------UCGCG----------CGCGU-GCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 4512 | 0.67 | 0.248822 |
Target: 5'- --cGGGCGGCGcccgugaacguGGCGUgcuggGCGguCGUGCc -3' miRNA: 3'- uguCCCGCCGU-----------UCGCG-----CGCguGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 42416 | 0.67 | 0.248194 |
Target: 5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3' miRNA: 3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 41197 | 0.67 | 0.241986 |
Target: 5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3' miRNA: 3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 16935 | 0.67 | 0.236511 |
Target: 5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3' miRNA: 3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 25070 | 0.67 | 0.230548 |
Target: 5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3' miRNA: 3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5' |
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26806 | 3' | -62.4 | NC_005808.1 | + | 8143 | 0.68 | 0.224714 |
Target: 5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3' miRNA: 3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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