miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 5' -54.7 NC_005808.1 + 21418 0.66 0.6676
Target:  5'- cCAGCAGCAGGcCGcgcaGCAGGCcGCGc -3'
miRNA:   3'- -GUCGUUGUCUaGCucc-UGUCCGaCGC- -5'
26807 5' -54.7 NC_005808.1 + 35385 0.66 0.6676
Target:  5'- gCGGC-GCAGAUgcugcCGuGGACAucgcgcugucccGGCUGCGu -3'
miRNA:   3'- -GUCGuUGUCUA-----GCuCCUGU------------CCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 32476 0.66 0.65629
Target:  5'- aGGCGugGccGGUaCGAGGACAGGCa--- -3'
miRNA:   3'- gUCGUugU--CUA-GCUCCUGUCCGacgc -5'
26807 5' -54.7 NC_005808.1 + 10997 0.66 0.644956
Target:  5'- aAGCAGCAGGUa-GGGccagaaGCAGGCccagGCGa -3'
miRNA:   3'- gUCGUUGUCUAgcUCC------UGUCCGa---CGC- -5'
26807 5' -54.7 NC_005808.1 + 4828 0.66 0.644956
Target:  5'- cCGGCGACAGGUCGccGuagucgaugaccAUAGGUUGCc -3'
miRNA:   3'- -GUCGUUGUCUAGCucC------------UGUCCGACGc -5'
26807 5' -54.7 NC_005808.1 + 409 0.66 0.629069
Target:  5'- cCAGCAGCAcggcgguGAUCGucGGCcguaccuugucguuGGGCUGCu -3'
miRNA:   3'- -GUCGUUGU-------CUAGCucCUG--------------UCCGACGc -5'
26807 5' -54.7 NC_005808.1 + 19961 0.66 0.622261
Target:  5'- aGGCAACccAGGUUucGGGCAGGCcGCc -3'
miRNA:   3'- gUCGUUG--UCUAGcuCCUGUCCGaCGc -5'
26807 5' -54.7 NC_005808.1 + 24082 0.67 0.610923
Target:  5'- gCGGCGACcGcgCGGGGcACGGGCaccccgcuacaUGCGc -3'
miRNA:   3'- -GUCGUUGuCuaGCUCC-UGUCCG-----------ACGC- -5'
26807 5' -54.7 NC_005808.1 + 32930 0.67 0.610923
Target:  5'- aCGGCGGCuGuUCGgccAGGGCGaccacGGCUGCGu -3'
miRNA:   3'- -GUCGUUGuCuAGC---UCCUGU-----CCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 27475 0.67 0.599603
Target:  5'- cCAGCAugGGGUCGGGccuGGUAGGCaGCu -3'
miRNA:   3'- -GUCGUugUCUAGCUC---CUGUCCGaCGc -5'
26807 5' -54.7 NC_005808.1 + 16456 0.67 0.562511
Target:  5'- aCGGCGucgUAGAUCGGGGGCgugacggacaggucGGGC-GCGa -3'
miRNA:   3'- -GUCGUu--GUCUAGCUCCUG--------------UCCGaCGC- -5'
26807 5' -54.7 NC_005808.1 + 13718 0.68 0.559166
Target:  5'- cCAGCAACuacgccagcagCGAGGACGuGGCgcgGCGc -3'
miRNA:   3'- -GUCGUUGucua-------GCUCCUGU-CCGa--CGC- -5'
26807 5' -54.7 NC_005808.1 + 2170 0.68 0.543636
Target:  5'- uGGCgAACAGuugCGAGGugAGGCUa-- -3'
miRNA:   3'- gUCG-UUGUCua-GCUCCugUCCGAcgc -5'
26807 5' -54.7 NC_005808.1 + 34046 0.68 0.532629
Target:  5'- cCAGgAugAGGUCGAGcGCGGcCUGCGa -3'
miRNA:   3'- -GUCgUugUCUAGCUCcUGUCcGACGC- -5'
26807 5' -54.7 NC_005808.1 + 28056 0.68 0.521704
Target:  5'- uCGGCGACGGucugcUCGAacagcGGGCAGGUggccGCGg -3'
miRNA:   3'- -GUCGUUGUCu----AGCU-----CCUGUCCGa---CGC- -5'
26807 5' -54.7 NC_005808.1 + 20296 0.68 0.521704
Target:  5'- cCAGUAGCGGGUUGcucGGcGGCcGGUUGCGa -3'
miRNA:   3'- -GUCGUUGUCUAGC---UC-CUGuCCGACGC- -5'
26807 5' -54.7 NC_005808.1 + 11747 0.68 0.500124
Target:  5'- -uGCgAACuGAUCGGcGACAGGUUGCa -3'
miRNA:   3'- guCG-UUGuCUAGCUcCUGUCCGACGc -5'
26807 5' -54.7 NC_005808.1 + 7066 0.68 0.500124
Target:  5'- gGGCGGCAGcGUCGuuuGaACAGGCUGgCGg -3'
miRNA:   3'- gUCGUUGUC-UAGCu--CcUGUCCGAC-GC- -5'
26807 5' -54.7 NC_005808.1 + 5250 0.68 0.500124
Target:  5'- uCGGcCGGCAGGUCGGGGuC-GGCaaUGCGu -3'
miRNA:   3'- -GUC-GUUGUCUAGCUCCuGuCCG--ACGC- -5'
26807 5' -54.7 NC_005808.1 + 34360 0.69 0.489483
Target:  5'- cCAGCGACuucgccGA-CGAGGGCAcGGCcGCGc -3'
miRNA:   3'- -GUCGUUGu-----CUaGCUCCUGU-CCGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.