miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26809 5' -59.4 NC_005808.1 + 35182 0.66 0.429035
Target:  5'- gGCCGGCCAUccGgUGCCCGGc-UUCAa -3'
miRNA:   3'- -CGGCCGGUAc-UgGCGGGCCacAAGUa -5'
26809 5' -59.4 NC_005808.1 + 12695 0.66 0.410219
Target:  5'- gGCCcGCCuUGAuaGCCUGGcUGUUCAa -3'
miRNA:   3'- -CGGcCGGuACUggCGGGCC-ACAAGUa -5'
26809 5' -59.4 NC_005808.1 + 41285 0.66 0.409292
Target:  5'- uGUCGGCCugGUGGCCGUCgcccugggcgcggCGGUGUgggCGg -3'
miRNA:   3'- -CGGCCGG--UACUGGCGG-------------GCCACAa--GUa -5'
26809 5' -59.4 NC_005808.1 + 4431 0.66 0.401005
Target:  5'- uGCCGcGCCAgggGgaaGCCGCCagCGGUGgcaccgUCAUg -3'
miRNA:   3'- -CGGC-CGGUa--C---UGGCGG--GCCACa-----AGUA- -5'
26809 5' -59.4 NC_005808.1 + 26514 0.66 0.391925
Target:  5'- aGCCGGCaucauucACCGCCaCGGUuUUCAg -3'
miRNA:   3'- -CGGCCGguac---UGGCGG-GCCAcAAGUa -5'
26809 5' -59.4 NC_005808.1 + 13979 0.66 0.391925
Target:  5'- gGCCGGCCucaucCgCGCCCGGU--UCAa -3'
miRNA:   3'- -CGGCCGGuacu-G-GCGGGCCAcaAGUa -5'
26809 5' -59.4 NC_005808.1 + 2660 0.67 0.382979
Target:  5'- --gGGCCAgcgG-UCGCCCaGGUGUUCGa -3'
miRNA:   3'- cggCCGGUa--CuGGCGGG-CCACAAGUa -5'
26809 5' -59.4 NC_005808.1 + 40360 0.67 0.37417
Target:  5'- uGCCGGCCAag---GCCCGGcGUUUAUa -3'
miRNA:   3'- -CGGCCGGUacuggCGGGCCaCAAGUA- -5'
26809 5' -59.4 NC_005808.1 + 30584 0.67 0.37417
Target:  5'- cGCCGGCCAcGGCCGCgCUGcUGgcCGa -3'
miRNA:   3'- -CGGCCGGUaCUGGCG-GGCcACaaGUa -5'
26809 5' -59.4 NC_005808.1 + 8986 0.67 0.348578
Target:  5'- cGgUGGCCGUG-CCGCCagCGGUGgcCGUg -3'
miRNA:   3'- -CgGCCGGUACuGGCGG--GCCACaaGUA- -5'
26809 5' -59.4 NC_005808.1 + 6396 0.68 0.324259
Target:  5'- gGCCGGCCG-----GCCCGGUGUagUCGc -3'
miRNA:   3'- -CGGCCGGUacuggCGGGCCACA--AGUa -5'
26809 5' -59.4 NC_005808.1 + 694 0.68 0.301226
Target:  5'- cGCCGGCCG-GGCCGCCCa-------- -3'
miRNA:   3'- -CGGCCGGUaCUGGCGGGccacaagua -5'
26809 5' -59.4 NC_005808.1 + 34831 0.7 0.215975
Target:  5'- cGCCGGCgCA-GAUCGCgCCGGUGcugCAa -3'
miRNA:   3'- -CGGCCG-GUaCUGGCG-GGCCACaa-GUa -5'
26809 5' -59.4 NC_005808.1 + 24576 0.73 0.152251
Target:  5'- gGCCGGCCAcggucgGGCCGUCCGGcGUg--- -3'
miRNA:   3'- -CGGCCGGUa-----CUGGCGGGCCaCAagua -5'
26809 5' -59.4 NC_005808.1 + 41573 0.83 0.026467
Target:  5'- cGCCGGCCGUGGCCuUCCaGGUGUUCGa -3'
miRNA:   3'- -CGGCCGGUACUGGcGGG-CCACAAGUa -5'
26809 5' -59.4 NC_005808.1 + 40853 1.06 0.000414
Target:  5'- gGCCGGCCAUGACCGCCCGGUGUUCAUc -3'
miRNA:   3'- -CGGCCGGUACUGGCGGGCCACAAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.