miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2681 5' -58.8 NC_001491.2 + 34100 0.66 0.779958
Target:  5'- cGCCCCugUGGCccaCCGUCC--CCGGGa -3'
miRNA:   3'- cUGGGG--ACCGaaaGGUAGGucGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 2931 0.66 0.779958
Target:  5'- cGCCuCCUGGCUgagg--UgGGCCGGGg -3'
miRNA:   3'- cUGG-GGACCGAaagguaGgUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 97149 0.67 0.723307
Target:  5'- --aCCCUGGCg--CUcgaugaaguggAUCUGGCCGGGc -3'
miRNA:   3'- cugGGGACCGaaaGG-----------UAGGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 34397 0.67 0.723307
Target:  5'- aGCCCCUGGag--CCGgcggCCcaGGCCGGa -3'
miRNA:   3'- cUGGGGACCgaaaGGUa---GG--UCGGCCc -5'
2681 5' -58.8 NC_001491.2 + 24745 0.67 0.723307
Target:  5'- gGACCCgCgGGCg--CCcgCCGcccGCCGGGc -3'
miRNA:   3'- -CUGGG-GaCCGaaaGGuaGGU---CGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 33700 0.68 0.703724
Target:  5'- -uCCCgaGGCgcugugcUCCAacCCGGCCGGGc -3'
miRNA:   3'- cuGGGgaCCGaa-----AGGUa-GGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 46587 0.68 0.697801
Target:  5'- cACCuCCUugugggacgaguacaGGCg---CGUCCAGCCGGGa -3'
miRNA:   3'- cUGG-GGA---------------CCGaaagGUAGGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 34534 0.68 0.683908
Target:  5'- cGGgCCCUGGgac-CCAUgCCAGCCGaGGg -3'
miRNA:   3'- -CUgGGGACCgaaaGGUA-GGUCGGC-CC- -5'
2681 5' -58.8 NC_001491.2 + 84724 0.68 0.663926
Target:  5'- aACCCaagcagugUUGGCg--CCAcaggugCCAGCCGGGg -3'
miRNA:   3'- cUGGG--------GACCGaaaGGUa-----GGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 2458 0.69 0.643845
Target:  5'- -uCCCCgaaGcGCgcgCCGUCCcgGGCCGGGg -3'
miRNA:   3'- cuGGGGa--C-CGaaaGGUAGG--UCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 28575 0.69 0.623727
Target:  5'- cGCCCCUGGCcc-CCGggCCAGguaCGGGc -3'
miRNA:   3'- cUGGGGACCGaaaGGUa-GGUCg--GCCC- -5'
2681 5' -58.8 NC_001491.2 + 5314 0.7 0.573666
Target:  5'- aGCCCCggagccgGGCUgggugCCGgggacgCCGGCUGGGc -3'
miRNA:   3'- cUGGGGa------CCGAaa---GGUa-----GGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 28803 0.7 0.563748
Target:  5'- cGCCCCgcacGGCUgUCCGUggggcauggcUgGGCCGGGg -3'
miRNA:   3'- cUGGGGa---CCGAaAGGUA----------GgUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 49319 0.7 0.534293
Target:  5'- cGGCCCUucccgggagUGGCg--CCAagUCCGGCgCGGGa -3'
miRNA:   3'- -CUGGGG---------ACCGaaaGGU--AGGUCG-GCCC- -5'
2681 5' -58.8 NC_001491.2 + 31884 0.7 0.534293
Target:  5'- uACCCCggcGGCUg-CCGcCCAGCCGGc -3'
miRNA:   3'- cUGGGGa--CCGAaaGGUaGGUCGGCCc -5'
2681 5' -58.8 NC_001491.2 + 104729 0.72 0.458841
Target:  5'- cGCCCCaaugGGCgagUCAUCCGGCagaGGGg -3'
miRNA:   3'- cUGGGGa---CCGaaaGGUAGGUCGg--CCC- -5'
2681 5' -58.8 NC_001491.2 + 58581 0.72 0.440863
Target:  5'- aGAUCCCgcgcgugGGUguacgUUCCGgccacaaagCCAGCCGGGg -3'
miRNA:   3'- -CUGGGGa------CCGa----AAGGUa--------GGUCGGCCC- -5'
2681 5' -58.8 NC_001491.2 + 62887 1.09 0.001538
Target:  5'- aGACCCCUGGCUUUCCAUCCAGCCGGGc -3'
miRNA:   3'- -CUGGGGACCGAAAGGUAGGUCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.