miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 3' -57.8 NC_005808.1 + 41469 1.07 0.000508
Target:  5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3'
miRNA:   3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 13643 0.76 0.095069
Target:  5'- uCGGCauguCGCUGCaUCAUGAguUCGAUGGCAGc -3'
miRNA:   3'- -GCCG----GCGACG-AGUACU--AGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 25164 0.76 0.100708
Target:  5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3'
miRNA:   3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5'
26810 3' -57.8 NC_005808.1 + 35278 0.75 0.116213
Target:  5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3'
miRNA:   3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5'
26810 3' -57.8 NC_005808.1 + 16148 0.74 0.14168
Target:  5'- gCGGCCGCacGCUgAUGGUgGugGGCGu -3'
miRNA:   3'- -GCCGGCGa-CGAgUACUAgCugCCGUu -5'
26810 3' -57.8 NC_005808.1 + 8628 0.74 0.154089
Target:  5'- uCGGCCGCUGCgguggCGaGGUCGcCGGCc- -3'
miRNA:   3'- -GCCGGCGACGa----GUaCUAGCuGCCGuu -5'
26810 3' -57.8 NC_005808.1 + 18795 0.73 0.167474
Target:  5'- aGGCCGCcaccuUGUUgGUGAUCuGGCGGCGc -3'
miRNA:   3'- gCCGGCG-----ACGAgUACUAG-CUGCCGUu -5'
26810 3' -57.8 NC_005808.1 + 25759 0.71 0.214045
Target:  5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3'
miRNA:   3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 4354 0.71 0.224602
Target:  5'- uGGCCGUUGCguugccggugcgCGUGAaggCGACGGCc- -3'
miRNA:   3'- gCCGGCGACGa-----------GUACUa--GCUGCCGuu -5'
26810 3' -57.8 NC_005808.1 + 1146 0.7 0.257596
Target:  5'- gCGGCCGUUugcGCUCGccGUCGAUGGUGAa -3'
miRNA:   3'- -GCCGGCGA---CGAGUacUAGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 13792 0.7 0.264378
Target:  5'- aCGGCgcgcugGCUGCUCAaGAUCGGCaaccagGGCAAg -3'
miRNA:   3'- -GCCGg-----CGACGAGUaCUAGCUG------CCGUU- -5'
26810 3' -57.8 NC_005808.1 + 19501 0.7 0.271305
Target:  5'- aGGCCGCUGCgaacCGUGGUCuugugcuCGGUGAa -3'
miRNA:   3'- gCCGGCGACGa---GUACUAGcu-----GCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 29763 0.69 0.292959
Target:  5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3'
miRNA:   3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5'
26810 3' -57.8 NC_005808.1 + 18572 0.69 0.308132
Target:  5'- aGGCCGC-GCUCGcGGU-GACGGCc- -3'
miRNA:   3'- gCCGGCGaCGAGUaCUAgCUGCCGuu -5'
26810 3' -57.8 NC_005808.1 + 34548 0.69 0.308132
Target:  5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3'
miRNA:   3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 39045 0.69 0.332002
Target:  5'- aGcCCGCUGCUgCGcUGuUCGGCGGCAGc -3'
miRNA:   3'- gCcGGCGACGA-GU-ACuAGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 13014 0.69 0.332002
Target:  5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3'
miRNA:   3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5'
26810 3' -57.8 NC_005808.1 + 25174 0.68 0.348656
Target:  5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3'
miRNA:   3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5'
26810 3' -57.8 NC_005808.1 + 36132 0.68 0.374735
Target:  5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3'
miRNA:   3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5'
26810 3' -57.8 NC_005808.1 + 31373 0.68 0.374735
Target:  5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3'
miRNA:   3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.