Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 5' | -53.9 | NC_005808.1 | + | 19635 | 0.66 | 0.714196 |
Target: 5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3' miRNA: 3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28783 | 0.66 | 0.691874 |
Target: 5'- -uCCGCCGaguGGCAgGAGGcacagGCGCGCa -3' miRNA: 3'- auGGCGGCgg-UUGUaCUUCa----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 19134 | 0.66 | 0.669305 |
Target: 5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3' miRNA: 3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8120 | 0.66 | 0.714196 |
Target: 5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3' miRNA: 3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 38569 | 0.66 | 0.703072 |
Target: 5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3' miRNA: 3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8990 | 0.66 | 0.669305 |
Target: 5'- gGCCguGCCGCCAGCGgu--GgcCGUGCc -3' miRNA: 3'- aUGG--CGGCGGUUGUacuuCauGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 6415 | 0.66 | 0.703072 |
Target: 5'- -gUCGCgGCC--CAUGucGUugGCGCc -3' miRNA: 3'- auGGCGgCGGuuGUACuuCAugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 40447 | 0.66 | 0.714196 |
Target: 5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3' miRNA: 3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 32384 | 0.66 | 0.725233 |
Target: 5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3' miRNA: 3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 37808 | 0.66 | 0.725233 |
Target: 5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3' miRNA: 3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 13346 | 0.66 | 0.680614 |
Target: 5'- -gUCGCCGCC-----GAAGU-CGCGCa -3' miRNA: 3'- auGGCGGCGGuuguaCUUCAuGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 5890 | 0.66 | 0.680614 |
Target: 5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3' miRNA: 3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 3897 | 0.66 | 0.680614 |
Target: 5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggACGCGCu -3' miRNA: 3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15569 | 0.66 | 0.725233 |
Target: 5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3' miRNA: 3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 35014 | 0.66 | 0.668171 |
Target: 5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCa -3' miRNA: 3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15170 | 0.66 | 0.680614 |
Target: 5'- cUGCgGCCGCCGggcGCGgUGcgccagGCGCGCg -3' miRNA: 3'- -AUGgCGGCGGU---UGU-ACuuca--UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 30599 | 0.66 | 0.669305 |
Target: 5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3' miRNA: 3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8395 | 0.66 | 0.669305 |
Target: 5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3' miRNA: 3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 10543 | 0.66 | 0.703072 |
Target: 5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3' miRNA: 3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18046 | 0.66 | 0.714196 |
Target: 5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3' miRNA: 3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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