miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 5890 0.66 0.680614
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 3897 0.66 0.680614
Target:  5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggACGCGCu -3'
miRNA:   3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 13346 0.66 0.680614
Target:  5'- -gUCGCCGCC-----GAAGU-CGCGCa -3'
miRNA:   3'- auGGCGGCGGuuguaCUUCAuGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34857 0.66 0.673833
Target:  5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3'
miRNA:   3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5'
26810 5' -53.9 NC_005808.1 + 19134 0.66 0.669305
Target:  5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3'
miRNA:   3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 30599 0.66 0.669305
Target:  5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3'
miRNA:   3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8990 0.66 0.669305
Target:  5'- gGCCguGCCGCCAGCGgu--GgcCGUGCc -3'
miRNA:   3'- aUGG--CGGCGGUUGUacuuCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8395 0.66 0.669305
Target:  5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3'
miRNA:   3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 35014 0.66 0.668171
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCa -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 32450 0.67 0.662501
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 13764 0.67 0.657958
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 35531 0.67 0.657958
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26810 5' -53.9 NC_005808.1 + 16529 0.67 0.657958
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 893 0.67 0.657958
Target:  5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3'
miRNA:   3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 5467 0.67 0.651137
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 35234 0.67 0.646586
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34022 0.67 0.643171
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 8630 0.67 0.642032
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 9324 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 9372 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.