Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 5' | -53.9 | NC_005808.1 | + | 29741 | 0.68 | 0.601065 |
Target: 5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3' miRNA: 3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 38360 | 0.68 | 0.601065 |
Target: 5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3' miRNA: 3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 17782 | 0.68 | 0.601065 |
Target: 5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3' miRNA: 3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 19049 | 0.68 | 0.601065 |
Target: 5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3' miRNA: 3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 14469 | 0.68 | 0.58973 |
Target: 5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3' miRNA: 3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 19079 | 0.68 | 0.58973 |
Target: 5'- --gCGCCGCCug---GAAG-GCGCGCu -3' miRNA: 3'- augGCGGCGGuuguaCUUCaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 5357 | 0.68 | 0.58973 |
Target: 5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3' miRNA: 3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 13282 | 0.68 | 0.58973 |
Target: 5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3' miRNA: 3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28475 | 0.68 | 0.578434 |
Target: 5'- aGCCGCUgGCCGACG---AGUACG-GCg -3' miRNA: 3'- aUGGCGG-CGGUUGUacuUCAUGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 10172 | 0.68 | 0.578434 |
Target: 5'- cGCUGCCGUCGucuugGCA-GAcGUgGCGCGCg -3' miRNA: 3'- aUGGCGGCGGU-----UGUaCUuCA-UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 37002 | 0.68 | 0.578434 |
Target: 5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3' miRNA: 3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 40441 | 0.68 | 0.578434 |
Target: 5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3' miRNA: 3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18685 | 0.68 | 0.578434 |
Target: 5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3' miRNA: 3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 25041 | 0.68 | 0.577307 |
Target: 5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3' miRNA: 3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 1157 | 0.68 | 0.57618 |
Target: 5'- cGCuCGCCGUCgAugGUGAAGgacagccguauCGCGCu -3' miRNA: 3'- aUG-GCGGCGG-UugUACUUCau---------GCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 33832 | 0.68 | 0.567185 |
Target: 5'- cGCCGCgUGCUGcccgaagcggcACGUGAA-UACGCGCg -3' miRNA: 3'- aUGGCG-GCGGU-----------UGUACUUcAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28280 | 0.68 | 0.567185 |
Target: 5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3' miRNA: 3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 25534 | 0.68 | 0.567185 |
Target: 5'- uUGCCGCCGCCGGCA--------GCGCc -3' miRNA: 3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 22303 | 0.68 | 0.567185 |
Target: 5'- gGCCGCCGagCAACccGcuacuGGUGCGgGCa -3' miRNA: 3'- aUGGCGGCg-GUUGuaCu----UCAUGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 14022 | 0.68 | 0.567185 |
Target: 5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3' miRNA: 3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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