miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26811 5' -58.6 NC_005808.1 + 13904 0.66 0.481886
Target:  5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3'
miRNA:   3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5'
26811 5' -58.6 NC_005808.1 + 14043 0.66 0.492074
Target:  5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3'
miRNA:   3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5'
26811 5' -58.6 NC_005808.1 + 14255 0.69 0.303411
Target:  5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3'
miRNA:   3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5'
26811 5' -58.6 NC_005808.1 + 14860 0.68 0.351778
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 15089 0.76 0.095952
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26811 5' -58.6 NC_005808.1 + 15159 0.67 0.413696
Target:  5'- aGCGCCaGGGcCUGcGGCCGccgggcgCGgugCGCCa -3'
miRNA:   3'- -CGCGGcUCC-GACuCCGGUa------GUa--GCGG- -5'
26811 5' -58.6 NC_005808.1 + 15468 0.68 0.377494
Target:  5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3'
miRNA:   3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 15871 0.69 0.310976
Target:  5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3'
miRNA:   3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5'
26811 5' -58.6 NC_005808.1 + 16274 0.67 0.43258
Target:  5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3'
miRNA:   3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5'
26811 5' -58.6 NC_005808.1 + 16816 0.75 0.113604
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 18019 0.66 0.461823
Target:  5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3'
miRNA:   3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 18268 0.68 0.335336
Target:  5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3'
miRNA:   3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5'
26811 5' -58.6 NC_005808.1 + 18396 0.67 0.395327
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26811 5' -58.6 NC_005808.1 + 18449 0.68 0.377494
Target:  5'- cCGUCGAGGCgcuGGGCCAggcgCGCa -3'
miRNA:   3'- cGCGGCUCCGac-UCCGGUaguaGCGg -5'
26811 5' -58.6 NC_005808.1 + 18468 0.67 0.413696
Target:  5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5'
26811 5' -58.6 NC_005808.1 + 18998 0.72 0.186192
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 19044 0.72 0.19073
Target:  5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3'
miRNA:   3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5'
26811 5' -58.6 NC_005808.1 + 19382 0.72 0.207112
Target:  5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3'
miRNA:   3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5'
26811 5' -58.6 NC_005808.1 + 19725 0.75 0.128431
Target:  5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3'
miRNA:   3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5'
26811 5' -58.6 NC_005808.1 + 20175 0.66 0.492074
Target:  5'- uGCGCCuugcGGCUuc-GCCuuGUCGUCGCCc -3'
miRNA:   3'- -CGCGGcu--CCGAcucCGG--UAGUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.