miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26812 3' -55.1 NC_005808.1 + 10171 0.66 0.653546
Target:  5'- uCGCUGccgucgucuuGGCaGACGUGGCgCGCGGCu -3'
miRNA:   3'- -GUGAUu---------CUGgUUGCACCGgGCGCUGc -5'
26812 3' -55.1 NC_005808.1 + 7377 0.68 0.531855
Target:  5'- -----cGuCCAGCGgcgGGCaCCGCGGCGa -3'
miRNA:   3'- gugauuCuGGUUGCa--CCG-GGCGCUGC- -5'
26812 3' -55.1 NC_005808.1 + 12626 0.68 0.531855
Target:  5'- gGCUGcauccAGGCCGuCGU-GCgCCGCGACGa -3'
miRNA:   3'- gUGAU-----UCUGGUuGCAcCG-GGCGCUGC- -5'
26812 3' -55.1 NC_005808.1 + 33750 0.8 0.100059
Target:  5'- gACcGAGGCCAACGcgcUGGCCCGCGuuGCGg -3'
miRNA:   3'- gUGaUUCUGGUUGC---ACCGGGCGC--UGC- -5'
26812 3' -55.1 NC_005808.1 + 17918 0.79 0.109063
Target:  5'- aGCcuGGGCgugGACGUGGCCCGCGGCGg -3'
miRNA:   3'- gUGauUCUGg--UUGCACCGGGCGCUGC- -5'
26812 3' -55.1 NC_005808.1 + 14022 0.79 0.122253
Target:  5'- aCGCUGccgguGGCCGACGUGcGCgCCGCGAUGg -3'
miRNA:   3'- -GUGAUu----CUGGUUGCAC-CG-GGCGCUGC- -5'
26812 3' -55.1 NC_005808.1 + 15146 0.72 0.330422
Target:  5'- gCGCUGGcauACCAGCGccagGGCCUGCGGCc -3'
miRNA:   3'- -GUGAUUc--UGGUUGCa---CCGGGCGCUGc -5'
26812 3' -55.1 NC_005808.1 + 23903 0.69 0.458618
Target:  5'- gCGCUGcuGCUGACcgaGGCCCGCGugGu -3'
miRNA:   3'- -GUGAUucUGGUUGca-CCGGGCGCugC- -5'
26812 3' -55.1 NC_005808.1 + 12449 0.69 0.489396
Target:  5'- cCGCUGAuGuCCGACGcggugcaGGCCgGCGGCGu -3'
miRNA:   3'- -GUGAUU-CuGGUUGCa------CCGGgCGCUGC- -5'
26812 3' -55.1 NC_005808.1 + 22967 0.69 0.499869
Target:  5'- aCGCU--GGCCGAUGUcgcGGCCCGCaugaccccgGACGg -3'
miRNA:   3'- -GUGAuuCUGGUUGCA---CCGGGCG---------CUGC- -5'
26812 3' -55.1 NC_005808.1 + 18879 0.68 0.521105
Target:  5'- cCACcGAGGC--AC-UGGCCCGCGACc -3'
miRNA:   3'- -GUGaUUCUGguUGcACCGGGCGCUGc -5'
26812 3' -55.1 NC_005808.1 + 10933 0.66 0.686862
Target:  5'- uGCUuguGGCCggUGUaGGCCCaccaaGCGGCa -3'
miRNA:   3'- gUGAuu-CUGGuuGCA-CCGGG-----CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.