Results 21 - 40 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 1670 | 0.67 | 0.385362 |
Target: 5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3' miRNA: 3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 10736 | 0.67 | 0.376588 |
Target: 5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3' miRNA: 3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 11557 | 0.67 | 0.35945 |
Target: 5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3' miRNA: 3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 18159 | 0.67 | 0.35026 |
Target: 5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3' miRNA: 3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 25794 | 0.68 | 0.342865 |
Target: 5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3' miRNA: 3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 29574 | 0.68 | 0.334781 |
Target: 5'- aUCGCGUcagGUcGGCCGCGCcCAGgcgcgCGGu -3' miRNA: 3'- cAGCGCG---CGaCCGGCGCGaGUUa----GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 25301 | 0.68 | 0.326838 |
Target: 5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3' miRNA: 3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 2245 | 0.68 | 0.324483 |
Target: 5'- --gGCGCG-UGGCCGCGCaaugaaucuucuugUCGAUCa- -3' miRNA: 3'- cagCGCGCgACCGGCGCG--------------AGUUAGcc -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 22057 | 0.68 | 0.303852 |
Target: 5'- cGUCGCGCuuGCUcgGGUCGCGgUCGGcgcgCGGc -3' miRNA: 3'- -CAGCGCG--CGA--CCGGCGCgAGUUa---GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 2546 | 0.69 | 0.296471 |
Target: 5'- uUCGCG-GUaggGGCCGCGCUCGuaauugcCGGc -3' miRNA: 3'- cAGCGCgCGa--CCGGCGCGAGUua-----GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 28282 | 0.69 | 0.29211 |
Target: 5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3' miRNA: 3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 19760 | 0.69 | 0.289231 |
Target: 5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3' miRNA: 3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 16812 | 0.69 | 0.282129 |
Target: 5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3' miRNA: 3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 15143 | 0.69 | 0.275167 |
Target: 5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3' miRNA: 3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 1081 | 0.69 | 0.268343 |
Target: 5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3' miRNA: 3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 8979 | 0.69 | 0.268343 |
Target: 5'- uUCGCaGCGgUGGCCGUGCcgcCAG-CGGu -3' miRNA: 3'- cAGCG-CGCgACCGGCGCGa--GUUaGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 7544 | 0.7 | 0.248689 |
Target: 5'- -cCGCaCGCUGGCuCGCGgccgggucguaCUUAAUCGGa -3' miRNA: 3'- caGCGcGCGACCG-GCGC-----------GAGUUAGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 24146 | 0.7 | 0.236259 |
Target: 5'- -cUGCGCGcCUGGCCcaGCGcCUCGA-CGGc -3' miRNA: 3'- caGCGCGC-GACCGG--CGC-GAGUUaGCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 21429 | 0.7 | 0.235651 |
Target: 5'- -cCGCGCaGCaGGCCGCGCUguugaacCAGggcgCGGa -3' miRNA: 3'- caGCGCG-CGaCCGGCGCGA-------GUUa---GCC- -5' |
|||||||
26812 | 5' | -59.5 | NC_005808.1 | + | 26340 | 0.71 | 0.212961 |
Target: 5'- -cCGCGaaCUGGCCGCGCcgcUCGuAUCGGc -3' miRNA: 3'- caGCGCgcGACCGGCGCG---AGU-UAGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home