miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 36202 0.7 0.523802
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26813 3' -52.4 NC_005808.1 + 29397 0.7 0.535053
Target:  5'- aAgAACAUGCaGGCGUACa-ACGCCGg -3'
miRNA:   3'- aUgUUGUACG-CCGUAUGgaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 40011 0.69 0.546388
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26813 3' -52.4 NC_005808.1 + 20736 0.69 0.557798
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 31628 0.69 0.566975
Target:  5'- cGCAGCGUGgcagggccucaaGGCAUACCgu-GCCGCu -3'
miRNA:   3'- aUGUUGUACg-----------CCGUAUGGaugCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7764 0.69 0.569275
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8000 0.69 0.580809
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8339 0.68 0.604012
Target:  5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3'
miRNA:   3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 37244 0.68 0.615659
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 37340 0.68 0.627322
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 14519 0.68 0.63899
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 27749 0.68 0.63899
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5'
26813 3' -52.4 NC_005808.1 + 11130 0.68 0.63899
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26813 3' -52.4 NC_005808.1 + 17638 0.68 0.63899
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 10959 0.68 0.650651
Target:  5'- aGCGGCA--CGGUAUGCCUugagcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 210 0.68 0.650651
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36701 0.67 0.662293
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 30083 0.67 0.662293
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 34329 0.67 0.673903
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 21993 0.67 0.673903
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.