miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 31628 0.69 0.566975
Target:  5'- cGCAGCGUGgcagggccucaaGGCAUACCgu-GCCGCu -3'
miRNA:   3'- aUGUUGUACg-----------CCGUAUGGaugCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 30083 0.67 0.662293
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 29397 0.7 0.535053
Target:  5'- aAgAACAUGCaGGCGUACa-ACGCCGg -3'
miRNA:   3'- aUgUUGUACG-CCGUAUGgaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 29259 0.75 0.26306
Target:  5'- cGCGACuucgGCGGCGaccugccgaaaGCCUACGCCGCc -3'
miRNA:   3'- aUGUUGua--CGCCGUa----------UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 27749 0.68 0.63899
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5'
26813 3' -52.4 NC_005808.1 + 26855 0.72 0.378668
Target:  5'- aACGAgGUGCGGUAUgucgagcgcaugGCCUcGCGCCAg -3'
miRNA:   3'- aUGUUgUACGCCGUA------------UGGA-UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 26460 0.73 0.360225
Target:  5'- -uCAGCGUGCGGCcgcaguCCUACGUCGg -3'
miRNA:   3'- auGUUGUACGCCGuau---GGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 25303 0.66 0.774802
Target:  5'- ----uCGUGCGGCcgGCCc-UGCCACc -3'
miRNA:   3'- auguuGUACGCCGuaUGGauGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 25225 0.66 0.71977
Target:  5'- gGCGcgAUGCaGGCAUACCUGuCGCagGCg -3'
miRNA:   3'- aUGUugUACG-CCGUAUGGAU-GCGg-UG- -5'
26813 3' -52.4 NC_005808.1 + 24472 0.73 0.342417
Target:  5'- gACGACcUGCuGCuugGCCUGCGCCAg -3'
miRNA:   3'- aUGUUGuACGcCGua-UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 23747 0.76 0.235762
Target:  5'- cGCAGCA-GCGcCAUGCCgGCGCCACc -3'
miRNA:   3'- aUGUUGUaCGCcGUAUGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 23262 0.71 0.42645
Target:  5'- aACAGCAUGgucagguCGGUGUcgGCgUGCGCCACg -3'
miRNA:   3'- aUGUUGUAC-------GCCGUA--UGgAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 23192 0.71 0.427462
Target:  5'- gACAGCAUGgGGaugcuggaaACCUACGCCGa -3'
miRNA:   3'- aUGUUGUACgCCgua------UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 22311 0.66 0.753191
Target:  5'- gGCAGCAcgaugcUGCuGGcCGUGCCgaacGCGCCGa -3'
miRNA:   3'- aUGUUGU------ACG-CC-GUAUGGa---UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 21993 0.67 0.673903
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5'
26813 3' -52.4 NC_005808.1 + 21875 0.66 0.73884
Target:  5'- aGCAGCAUGuCGGCcugauggggugcccGUGCCU-CGUCGu -3'
miRNA:   3'- aUGUUGUAC-GCCG--------------UAUGGAuGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 21453 0.67 0.673903
Target:  5'- cUGCGGCGgggGCGGCAggauguugGCCU-CGaCCAUg -3'
miRNA:   3'- -AUGUUGUa--CGCCGUa-------UGGAuGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 20736 0.69 0.557798
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 19856 0.73 0.369367
Target:  5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3'
miRNA:   3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 18465 0.67 0.696978
Target:  5'- cGCGGCGccgGCGGCGUcgGCCgauuCGuCCACc -3'
miRNA:   3'- aUGUUGUa--CGCCGUA--UGGau--GC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.