miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 17638 0.68 0.63899
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 17019 0.66 0.742171
Target:  5'- gGCcGCAgaccGCGGCGUACaacuccgACGCCGa -3'
miRNA:   3'- aUGuUGUa---CGCCGUAUGga-----UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 15140 0.77 0.205025
Target:  5'- cGCGGCGcGCuGGCAUACCaGCGCCAg -3'
miRNA:   3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 14888 0.67 0.708416
Target:  5'- cAUGACcgGCGGCGaGCCgcUGCCGg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGGauGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 14767 0.66 0.774802
Target:  5'- cGCAGCGUGuCGGUGUcgAUCUGCuUCACg -3'
miRNA:   3'- aUGUUGUAC-GCCGUA--UGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14756 0.75 0.285178
Target:  5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3'
miRNA:   3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14519 0.68 0.63899
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14382 0.66 0.717507
Target:  5'- cGCGugGUcgucggcGUGGCcgACCUggacaagGCGCCGCa -3'
miRNA:   3'- aUGUugUA-------CGCCGuaUGGA-------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14023 0.67 0.673903
Target:  5'- cGCuGCcgGUGGCcgACgUgcGCGCCGCg -3'
miRNA:   3'- aUGuUGuaCGCCGuaUGgA--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 13622 0.66 0.764073
Target:  5'- gACAGCAUcgguaGCGGCAgcaaguCCgGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-----CGCCGUau----GGaUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 12235 0.67 0.685469
Target:  5'- cUACAGCA-GCGGCGgguUCUcGCGCgACg -3'
miRNA:   3'- -AUGUUGUaCGCCGUau-GGA-UGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 11198 0.66 0.742171
Target:  5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3'
miRNA:   3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 11130 0.68 0.63899
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26813 3' -52.4 NC_005808.1 + 10959 0.68 0.650651
Target:  5'- aGCGGCA--CGGUAUGCCUugagcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 9400 0.66 0.774802
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 8778 0.66 0.728783
Target:  5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3'
miRNA:   3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8452 0.66 0.718638
Target:  5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3'
miRNA:   3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5'
26813 3' -52.4 NC_005808.1 + 8339 0.68 0.604012
Target:  5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3'
miRNA:   3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 8208 0.66 0.753191
Target:  5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 8000 0.69 0.580809
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.