miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 40135 0.67 0.132538
Target:  5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3'
miRNA:   3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 29133 0.67 0.143216
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 25801 0.67 0.127147
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 4531 0.67 0.146947
Target:  5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3'
miRNA:   3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 21772 0.67 0.146947
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26814 3' -68.1 NC_005809.1 + 27441 0.67 0.139212
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 7636 0.67 0.136013
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 1031 0.67 0.132538
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 23739 0.67 0.146947
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5'
26814 3' -68.1 NC_005809.1 + 31877 0.67 0.146947
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26814 3' -68.1 NC_005809.1 + 31315 0.67 0.129145
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26814 3' -68.1 NC_005809.1 + 31047 0.67 0.12881
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 14869 0.67 0.143216
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26814 3' -68.1 NC_005809.1 + 33186 0.66 0.154676
Target:  5'- uGGGCGcCCuCGGCaCGGCcaCCGCUGgcGa -3'
miRNA:   3'- -CCCGCcGG-GCCG-GCCGc-GGCGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 25308 0.66 0.158677
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 16067 0.66 0.158677
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 28672 0.66 0.158677
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 22490 0.66 0.16696
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5'
26814 3' -68.1 NC_005809.1 + 28243 0.66 0.175628
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 32913 0.66 0.175628
Target:  5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3'
miRNA:   3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.