miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 37003 0.72 0.050847
Target:  5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3'
miRNA:   3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 37056 0.66 0.161533
Target:  5'- uGGGCGG-CCGGCguguccuacgacuuUGGCaGCauCGCCGUAc -3'
miRNA:   3'- -CCCGCCgGGCCG--------------GCCG-CG--GCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 38994 0.66 0.162771
Target:  5'- uGGCGGCCgCGGaUCGGUGUaCGCCc--- -3'
miRNA:   3'- cCCGCCGG-GCC-GGCCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 40135 0.67 0.132538
Target:  5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3'
miRNA:   3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 40435 0.66 0.16696
Target:  5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3'
miRNA:   3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 40548 0.68 0.122598
Target:  5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3'
miRNA:   3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5'
26814 3' -68.1 NC_005809.1 + 41296 0.7 0.082533
Target:  5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 41602 0.73 0.043196
Target:  5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3'
miRNA:   3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 41765 0.67 0.136013
Target:  5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3'
miRNA:   3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 41887 1.09 0.000049
Target:  5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3'
miRNA:   3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 42416 0.69 0.094012
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.