miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 21772 0.67 0.146947
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26814 3' -68.1 NC_005809.1 + 20817 0.67 0.137427
Target:  5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3'
miRNA:   3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5'
26814 3' -68.1 NC_005809.1 + 19872 0.68 0.122598
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 18825 0.74 0.042035
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 18465 0.68 0.119441
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 17998 0.67 0.139572
Target:  5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3'
miRNA:   3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 16947 0.69 0.099382
Target:  5'- aGGUGGacgcgcugCUGGCgCcGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCG-GcCGCGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 16760 0.69 0.092775
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 16067 0.66 0.158677
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 15233 0.69 0.10285
Target:  5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3'
miRNA:   3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 14869 0.67 0.143216
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26814 3' -68.1 NC_005809.1 + 14738 0.77 0.020046
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 13324 0.69 0.094262
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 13236 0.66 0.154676
Target:  5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3'
miRNA:   3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 13187 0.68 0.11042
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 10206 0.7 0.08036
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 9210 0.66 0.175628
Target:  5'- cGGCGGCgCGGCgcacguucugCGGCGCgC-CCGgcGg -3'
miRNA:   3'- cCCGCCGgGCCG----------GCCGCG-GcGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 8215 0.67 0.139572
Target:  5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3'
miRNA:   3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 8170 0.67 0.125832
Target:  5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3'
miRNA:   3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5'
26814 3' -68.1 NC_005809.1 + 7636 0.67 0.136013
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.