miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 6389 0.69 0.089392
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 5100 0.72 0.05981
Target:  5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3'
miRNA:   3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5'
26814 3' -68.1 NC_005809.1 + 4808 0.69 0.094262
Target:  5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3'
miRNA:   3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 4804 0.7 0.074166
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 4531 0.67 0.146947
Target:  5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3'
miRNA:   3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 3746 0.66 0.154676
Target:  5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3'
miRNA:   3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5'
26814 3' -68.1 NC_005809.1 + 1870 0.68 0.119441
Target:  5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3'
miRNA:   3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 1752 0.71 0.072205
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 1314 0.68 0.107557
Target:  5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3'
miRNA:   3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 1031 0.67 0.132538
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 688 0.8 0.013248
Target:  5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3'
miRNA:   3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.