Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 14869 | 0.67 | 0.143216 |
Target: 5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3' miRNA: 3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 15233 | 0.69 | 0.10285 |
Target: 5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3' miRNA: 3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16067 | 0.66 | 0.158677 |
Target: 5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3' miRNA: 3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16760 | 0.69 | 0.092775 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16947 | 0.69 | 0.099382 |
Target: 5'- aGGUGGacgcgcugCUGGCgCcGCGCCGCCGUGGu -3' miRNA: 3'- cCCGCCg-------GGCCG-GcCGCGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 17998 | 0.67 | 0.139572 |
Target: 5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3' miRNA: 3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 18465 | 0.68 | 0.119441 |
Target: 5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3' miRNA: 3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 18825 | 0.74 | 0.042035 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 19872 | 0.68 | 0.122598 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 20817 | 0.67 | 0.137427 |
Target: 5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3' miRNA: 3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 21772 | 0.67 | 0.146947 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 22490 | 0.66 | 0.16696 |
Target: 5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3' miRNA: 3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 23739 | 0.67 | 0.146947 |
Target: 5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3' miRNA: 3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24098 | 0.71 | 0.070294 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24302 | 0.71 | 0.070294 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 24575 | 0.69 | 0.09679 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25308 | 0.66 | 0.158677 |
Target: 5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3' miRNA: 3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25507 | 0.68 | 0.116056 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25630 | 0.66 | 0.162771 |
Target: 5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3' miRNA: 3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25801 | 0.67 | 0.127147 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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