miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 18465 0.68 0.119441
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 1870 0.68 0.119441
Target:  5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3'
miRNA:   3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5'
26814 3' -68.1 NC_005809.1 + 25507 0.68 0.116056
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 13187 0.68 0.11042
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 1314 0.68 0.107557
Target:  5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3'
miRNA:   3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 30547 0.68 0.107557
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 15233 0.69 0.10285
Target:  5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3'
miRNA:   3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 16947 0.69 0.099382
Target:  5'- aGGUGGacgcgcugCUGGCgCcGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCG-GcCGCGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 24575 0.69 0.09679
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5'
26814 3' -68.1 NC_005809.1 + 4808 0.69 0.094262
Target:  5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3'
miRNA:   3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 13324 0.69 0.094262
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 42416 0.69 0.094012
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 16760 0.69 0.092775
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 6389 0.69 0.089392
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 36172 0.7 0.084761
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 41296 0.7 0.082533
Target:  5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 10206 0.7 0.08036
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 4804 0.7 0.074166
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 35332 0.7 0.073572
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 1752 0.71 0.072205
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.