Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26816 | 3' | -54 | NC_005809.1 | + | 4391 | 0.66 | 0.749962 |
Target: 5'- --aGGCGccGUcGCGCCGGGCCuugagcGUGCGg -3' miRNA: 3'- cgaUUGC--CAaUGUGGCCCGGc-----UACGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 32087 | 0.66 | 0.749962 |
Target: 5'- aGC--ACGGcccguUCGGGCCGGUGCu -3' miRNA: 3'- -CGauUGCCaauguGGCCCGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 16115 | 0.66 | 0.739323 |
Target: 5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3' miRNA: 3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 776 | 0.66 | 0.728572 |
Target: 5'- cUUGcCGGUcAgAUCGGGCCGcUGCGc -3' miRNA: 3'- cGAUuGCCAaUgUGGCCCGGCuACGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 39399 | 0.66 | 0.728572 |
Target: 5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3' miRNA: 3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 5932 | 0.66 | 0.717721 |
Target: 5'- cGCUGGCGGcaucccagacgUACACgGGGCCauUGUc -3' miRNA: 3'- -CGAUUGCCa----------AUGUGgCCCGGcuACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 12598 | 0.66 | 0.706781 |
Target: 5'- --cGACGGcUGCAuCCaGGCCGucGUGCGc -3' miRNA: 3'- cgaUUGCCaAUGU-GGcCCGGC--UACGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 17492 | 0.67 | 0.695766 |
Target: 5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3' miRNA: 3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 29598 | 0.67 | 0.69466 |
Target: 5'- gGCgcGCGGUUugccaguuguccaGCGCCGGGCgcuUGUGg -3' miRNA: 3'- -CGauUGCCAA-------------UGUGGCCCGgcuACGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 15142 | 0.67 | 0.684686 |
Target: 5'- uGCUGGCGGcggaUGCGCCcagggcgacGGCUGAUGUu -3' miRNA: 3'- -CGAUUGCCa---AUGUGGc--------CCGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 6663 | 0.67 | 0.684686 |
Target: 5'- cGCUcAUGGUcUGCGCCacGCCGAUGUu -3' miRNA: 3'- -CGAuUGCCA-AUGUGGccCGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 37185 | 0.67 | 0.681351 |
Target: 5'- uGCUcGCGGcgcGCACCagugacauaacccuGGGCgCGGUGCa -3' miRNA: 3'- -CGAuUGCCaa-UGUGG--------------CCCG-GCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 4628 | 0.67 | 0.673554 |
Target: 5'- --cGGCGGggAUGCUGGGCCacgcUGCGu -3' miRNA: 3'- cgaUUGCCaaUGUGGCCCGGcu--ACGC- -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 23435 | 0.67 | 0.673554 |
Target: 5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3' miRNA: 3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 40483 | 0.67 | 0.662381 |
Target: 5'- ---cACGGcgAcCACCuGGGCCGAUGUc -3' miRNA: 3'- cgauUGCCaaU-GUGG-CCCGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 15590 | 0.67 | 0.638837 |
Target: 5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3' miRNA: 3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 5388 | 0.68 | 0.628732 |
Target: 5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3' miRNA: 3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 34793 | 0.68 | 0.606296 |
Target: 5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3' miRNA: 3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 33834 | 0.68 | 0.606296 |
Target: 5'- uGUUGACGGUaGCGCCGcgcccGCCGG-GCa -3' miRNA: 3'- -CGAUUGCCAaUGUGGCc----CGGCUaCGc -5' |
|||||||
26816 | 3' | -54 | NC_005809.1 | + | 8604 | 0.68 | 0.606296 |
Target: 5'- uGCUGGauaagcUGGUUGCGCUucucGGCCGcUGCGg -3' miRNA: 3'- -CGAUU------GCCAAUGUGGc---CCGGCuACGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home