Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26816 | 3' | -54 | NC_005809.1 | + | 42392 | 0.69 | 0.550772 |
Target: 5'- aGCgUGACGGUgcccagcgACACCGGGgCGcauccgccUGCGg -3' miRNA: 3'- -CG-AUUGCCAa-------UGUGGCCCgGCu-------ACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 41447 | 1.1 | 0.000859 |
Target: 5'- aGCUAACGGUUACACCGGGCCGAUGCGc -3' miRNA: 3'- -CGAUUGCCAAUGUGGCCCGGCUACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 40483 | 0.67 | 0.662381 |
Target: 5'- ---cACGGcgAcCACCuGGGCCGAUGUc -3' miRNA: 3'- cgauUGCCaaU-GUGG-CCCGGCUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 39399 | 0.66 | 0.728572 |
Target: 5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3' miRNA: 3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 37185 | 0.67 | 0.681351 |
Target: 5'- uGCUcGCGGcgcGCACCagugacauaacccuGGGCgCGGUGCa -3' miRNA: 3'- -CGAuUGCCaa-UGUGG--------------CCCG-GCUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 36170 | 0.69 | 0.539834 |
Target: 5'- --cAugGGccgcgacUACACCGGGCCGGccggccUGCGc -3' miRNA: 3'- cgaUugCCa------AUGUGGCCCGGCU------ACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 34793 | 0.68 | 0.606296 |
Target: 5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3' miRNA: 3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 33834 | 0.68 | 0.606296 |
Target: 5'- uGUUGACGGUaGCGCCGcgcccGCCGG-GCa -3' miRNA: 3'- -CGAUUGCCAaUGUGGCc----CGGCUaCGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 33298 | 0.69 | 0.528972 |
Target: 5'- cGCagcCGGUgu-ACCGGGCCGAccgcuuccUGCGg -3' miRNA: 3'- -CGauuGCCAaugUGGCCCGGCU--------ACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 32087 | 0.66 | 0.749962 |
Target: 5'- aGC--ACGGcccguUCGGGCCGGUGCu -3' miRNA: 3'- -CGauUGCCaauguGGCCCGGCUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 29598 | 0.67 | 0.69466 |
Target: 5'- gGCgcGCGGUUugccaguuguccaGCGCCGGGCgcuUGUGg -3' miRNA: 3'- -CGauUGCCAA-------------UGUGGCCCGgcuACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 27830 | 0.72 | 0.388017 |
Target: 5'- cGCUGcccGCGGUgGCGCCGGccgcGCCGcUGCu -3' miRNA: 3'- -CGAU---UGCCAaUGUGGCC----CGGCuACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 25804 | 0.73 | 0.352486 |
Target: 5'- cGCgcuCGGUaucguugaucUGCACCGGGCCGccguugGCGc -3' miRNA: 3'- -CGauuGCCA----------AUGUGGCCCGGCua----CGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 23760 | 0.78 | 0.159668 |
Target: 5'- uGCcGGCGc---CACCGGGCCGAUGCGc -3' miRNA: 3'- -CGaUUGCcaauGUGGCCCGGCUACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 23435 | 0.67 | 0.673554 |
Target: 5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3' miRNA: 3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 18146 | 0.68 | 0.606296 |
Target: 5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3' miRNA: 3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 17492 | 0.67 | 0.695766 |
Target: 5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3' miRNA: 3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 16115 | 0.66 | 0.739323 |
Target: 5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3' miRNA: 3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 15590 | 0.67 | 0.638837 |
Target: 5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3' miRNA: 3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5' |
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26816 | 3' | -54 | NC_005809.1 | + | 15142 | 0.74 | 0.311405 |
Target: 5'- gGCcuGCGGc--CGCCGGGCgCGGUGCGc -3' miRNA: 3'- -CGauUGCCaauGUGGCCCG-GCUACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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