miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26816 3' -54 NC_005809.1 + 27830 0.72 0.388017
Target:  5'- cGCUGcccGCGGUgGCGCCGGccgcGCCGcUGCu -3'
miRNA:   3'- -CGAU---UGCCAaUGUGGCC----CGGCuACGc -5'
26816 3' -54 NC_005809.1 + 29598 0.67 0.69466
Target:  5'- gGCgcGCGGUUugccaguuguccaGCGCCGGGCgcuUGUGg -3'
miRNA:   3'- -CGauUGCCAA-------------UGUGGCCCGgcuACGC- -5'
26816 3' -54 NC_005809.1 + 32087 0.66 0.749962
Target:  5'- aGC--ACGGcccguUCGGGCCGGUGCu -3'
miRNA:   3'- -CGauUGCCaauguGGCCCGGCUACGc -5'
26816 3' -54 NC_005809.1 + 33298 0.69 0.528972
Target:  5'- cGCagcCGGUgu-ACCGGGCCGAccgcuuccUGCGg -3'
miRNA:   3'- -CGauuGCCAaugUGGCCCGGCU--------ACGC- -5'
26816 3' -54 NC_005809.1 + 33834 0.68 0.606296
Target:  5'- uGUUGACGGUaGCGCCGcgcccGCCGG-GCa -3'
miRNA:   3'- -CGAUUGCCAaUGUGGCc----CGGCUaCGc -5'
26816 3' -54 NC_005809.1 + 34793 0.68 0.606296
Target:  5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3'
miRNA:   3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5'
26816 3' -54 NC_005809.1 + 36170 0.69 0.539834
Target:  5'- --cAugGGccgcgacUACACCGGGCCGGccggccUGCGc -3'
miRNA:   3'- cgaUugCCa------AUGUGGCCCGGCU------ACGC- -5'
26816 3' -54 NC_005809.1 + 37185 0.67 0.681351
Target:  5'- uGCUcGCGGcgcGCACCagugacauaacccuGGGCgCGGUGCa -3'
miRNA:   3'- -CGAuUGCCaa-UGUGG--------------CCCG-GCUACGc -5'
26816 3' -54 NC_005809.1 + 39399 0.66 0.728572
Target:  5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3'
miRNA:   3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5'
26816 3' -54 NC_005809.1 + 40483 0.67 0.662381
Target:  5'- ---cACGGcgAcCACCuGGGCCGAUGUc -3'
miRNA:   3'- cgauUGCCaaU-GUGG-CCCGGCUACGc -5'
26816 3' -54 NC_005809.1 + 41447 1.1 0.000859
Target:  5'- aGCUAACGGUUACACCGGGCCGAUGCGc -3'
miRNA:   3'- -CGAUUGCCAAUGUGGCCCGGCUACGC- -5'
26816 3' -54 NC_005809.1 + 42392 0.69 0.550772
Target:  5'- aGCgUGACGGUgcccagcgACACCGGGgCGcauccgccUGCGg -3'
miRNA:   3'- -CG-AUUGCCAa-------UGUGGCCCgGCu-------ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.