miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26816 5' -55.1 NC_005809.1 + 32167 0.66 0.660226
Target:  5'- --aGUGGCGaGGCCAucGGCGcgCUGCa -3'
miRNA:   3'- gcgCGCUGUgCCGGUu-CCGUuaGAUG- -5'
26816 5' -55.1 NC_005809.1 + 13907 0.66 0.660226
Target:  5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3'
miRNA:   3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5'
26816 5' -55.1 NC_005809.1 + 27904 0.66 0.660226
Target:  5'- aGCGCucaACACccgcacccaGGCCAAGGUGcaagguaucAUCUGCg -3'
miRNA:   3'- gCGCGc--UGUG---------CCGGUUCCGU---------UAGAUG- -5'
26816 5' -55.1 NC_005809.1 + 19251 0.66 0.648963
Target:  5'- uGCGCGGCuaccacgucauccCGGCCAgugccggccgcaaacAGGCAuUCgugGCg -3'
miRNA:   3'- gCGCGCUGu------------GCCGGU---------------UCCGUuAGa--UG- -5'
26816 5' -55.1 NC_005809.1 + 33868 0.66 0.644453
Target:  5'- uGCGCGACAuccgaccCGGCCAguacaccaacgccgAGGUGcgCgcgGCa -3'
miRNA:   3'- gCGCGCUGU-------GCCGGU--------------UCCGUuaGa--UG- -5'
26816 5' -55.1 NC_005809.1 + 25121 0.66 0.637684
Target:  5'- gGCGUGGCACcuGGCCucgaugcuGGCGGggccaCUGCu -3'
miRNA:   3'- gCGCGCUGUG--CCGGuu------CCGUUa----GAUG- -5'
26816 5' -55.1 NC_005809.1 + 7207 0.66 0.637684
Target:  5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3'
miRNA:   3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5'
26816 5' -55.1 NC_005809.1 + 27727 0.66 0.6264
Target:  5'- gCGUGCGGCGCuGGCCGccaacGGCA-UCg-- -3'
miRNA:   3'- -GCGCGCUGUG-CCGGUu----CCGUuAGaug -5'
26816 5' -55.1 NC_005809.1 + 12230 0.66 0.6264
Target:  5'- uCGCGCGACGacaaGGCCAAagaccccgacGCGAagUACa -3'
miRNA:   3'- -GCGCGCUGUg---CCGGUUc---------CGUUagAUG- -5'
26816 5' -55.1 NC_005809.1 + 13146 0.66 0.6264
Target:  5'- gGCGCGACguGCGagcGCguGGGCAAcgcgcccaagauUCUGCu -3'
miRNA:   3'- gCGCGCUG--UGC---CGguUCCGUU------------AGAUG- -5'
26816 5' -55.1 NC_005809.1 + 40434 0.66 0.6264
Target:  5'- aCG-GCGGCGCGGUUGAccGGCug-CUGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGGUU--CCGuuaGAUG- -5'
26816 5' -55.1 NC_005809.1 + 25796 0.66 0.6264
Target:  5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3'
miRNA:   3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5'
26816 5' -55.1 NC_005809.1 + 29843 0.66 0.615121
Target:  5'- gGCGCGGCACccagcaccaacgGGCC-GGGCGA-CUugaACa -3'
miRNA:   3'- gCGCGCUGUG------------CCGGuUCCGUUaGA---UG- -5'
26816 5' -55.1 NC_005809.1 + 9334 0.66 0.615121
Target:  5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3'
miRNA:   3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5'
26816 5' -55.1 NC_005809.1 + 18415 0.66 0.613994
Target:  5'- aGCGCGcagccgucgaggcGCugGGCCA-GGCGcgCaGCc -3'
miRNA:   3'- gCGCGC-------------UGugCCGGUuCCGUuaGaUG- -5'
26816 5' -55.1 NC_005809.1 + 21574 0.66 0.603858
Target:  5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3'
miRNA:   3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5'
26816 5' -55.1 NC_005809.1 + 31144 0.67 0.59262
Target:  5'- aGCGCGACGacGCUAAGGUAuggUUGCc -3'
miRNA:   3'- gCGCGCUGUgcCGGUUCCGUua-GAUG- -5'
26816 5' -55.1 NC_005809.1 + 38373 0.67 0.585894
Target:  5'- cCGCGaCGugcuCGCGGCCAacaugcccgccaucgAGGCGGccggCUACc -3'
miRNA:   3'- -GCGC-GCu---GUGCCGGU---------------UCCGUUa---GAUG- -5'
26816 5' -55.1 NC_005809.1 + 34617 0.67 0.581418
Target:  5'- uGCGCGcCGaGGCCAcGGGCAAgCUGu -3'
miRNA:   3'- gCGCGCuGUgCCGGU-UCCGUUaGAUg -5'
26816 5' -55.1 NC_005809.1 + 29492 0.67 0.581418
Target:  5'- gCGCGCGugGaGGCCGAGcGcCAAUUcaacaUGCa -3'
miRNA:   3'- -GCGCGCugUgCCGGUUC-C-GUUAG-----AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.