Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26817 | 3' | -57.8 | NC_005809.1 | + | 11151 | 0.66 | 0.471893 |
Target: 5'- uGCUGCUg--GGCCGCCUgcgCAcguugcgugcgcuggUCGGCCGu -3' miRNA: 3'- -UGGCGAaagCUGGCGGA---GU---------------AGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 15590 | 0.67 | 0.409523 |
Target: 5'- cGCUGCggaUGcACCGCgC-CAUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGC-UGGCG-GaGUAGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 8554 | 0.67 | 0.409523 |
Target: 5'- gGCCGCgcUCGACCucauccuggGCgUCGUaGGCCGc -3' miRNA: 3'- -UGGCGaaAGCUGG---------CGgAGUAgCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 36192 | 0.67 | 0.416094 |
Target: 5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3' miRNA: 3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 32359 | 0.67 | 0.428467 |
Target: 5'- cGCUGCggUCG-CCGCCgaggCccCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCuGGCGGa---GuaGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 1464 | 0.67 | 0.438132 |
Target: 5'- -gCGCggUCGGCgGCCUCcuggcaGGCCGg -3' miRNA: 3'- ugGCGaaAGCUGgCGGAGuag---CCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 15690 | 0.67 | 0.438132 |
Target: 5'- gGCCGCUaUCGAcgaagaaggcguCCGCCUgggCAUCgaacuggcgcgaGGCCAu -3' miRNA: 3'- -UGGCGAaAGCU------------GGCGGA---GUAG------------CCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 3764 | 0.67 | 0.44792 |
Target: 5'- cGCCGCUg--GACguaGCCUCGgUCGuGCCGa -3' miRNA: 3'- -UGGCGAaagCUGg--CGGAGU-AGC-CGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 29559 | 0.66 | 0.467852 |
Target: 5'- cGCCGUgcUCGGgguaUCGCgUCAggUCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCU----GGCGgAGU--AGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 28558 | 0.68 | 0.391109 |
Target: 5'- gGCCGCcggccaucgCGGCgCGCa-CGUCGGCCAc -3' miRNA: 3'- -UGGCGaaa------GCUG-GCGgaGUAGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 13537 | 0.68 | 0.364521 |
Target: 5'- cGCCGaacugUCGGCCGCCUgAcUCGGUg- -3' miRNA: 3'- -UGGCgaa--AGCUGGCGGAgU-AGCCGgu -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 38526 | 0.68 | 0.364521 |
Target: 5'- gGCCGCUggCcuGCCGCUcgCcgCGGCCGg -3' miRNA: 3'- -UGGCGAaaGc-UGGCGGa-GuaGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 5587 | 0.72 | 0.220165 |
Target: 5'- gGCCGCcaccgugUCGAuguCCGCCUCGUUGGUa- -3' miRNA: 3'- -UGGCGaa-----AGCU---GGCGGAGUAGCCGgu -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 33052 | 0.71 | 0.238233 |
Target: 5'- cCCGCgugcugUCGugCGCUUCAUCGGgUCGc -3' miRNA: 3'- uGGCGaa----AGCugGCGGAGUAGCC-GGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 22983 | 0.71 | 0.244526 |
Target: 5'- aGCCGgUcggaUUCGGCuuuCGCCUgGUCGGCCu -3' miRNA: 3'- -UGGCgA----AAGCUG---GCGGAgUAGCCGGu -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 23338 | 0.71 | 0.250957 |
Target: 5'- aGCCGCgcaaUUCGACgGCCUCG-CcGCCGa -3' miRNA: 3'- -UGGCGa---AAGCUGgCGGAGUaGcCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 3585 | 0.7 | 0.307484 |
Target: 5'- cACCGauccgCGGCCGCCagUGUUGGCCGu -3' miRNA: 3'- -UGGCgaaa-GCUGGCGGa-GUAGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 19616 | 0.69 | 0.33106 |
Target: 5'- uGCCGUccggggUCaugcgGGCCGCgaCAUCGGCCAg -3' miRNA: 3'- -UGGCGaa----AG-----CUGGCGgaGUAGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 14105 | 0.69 | 0.33106 |
Target: 5'- aGuuGCUUcuugagguuaUCG-CCGUaCUCGUCGGCCAg -3' miRNA: 3'- -UggCGAA----------AGCuGGCG-GAGUAGCCGGU- -5' |
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26817 | 3' | -57.8 | NC_005809.1 | + | 34852 | 0.69 | 0.339209 |
Target: 5'- gGCCGCcgagCGugCGCUgcaguUCAUCGGCa- -3' miRNA: 3'- -UGGCGaaa-GCugGCGG-----AGUAGCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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