Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26817 | 5' | -53.1 | NC_005809.1 | + | 30014 | 0.69 | 0.603364 |
Target: 5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3' miRNA: 3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 34904 | 0.69 | 0.603364 |
Target: 5'- -----cCCGACGACCUGGCC--CCCg -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGcuGGGg -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 2423 | 0.67 | 0.682503 |
Target: 5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3' miRNA: 3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 11853 | 0.7 | 0.51458 |
Target: 5'- -----cCCAACAAUCUGGUCGGCaCCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 24642 | 0.7 | 0.525433 |
Target: 5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3' miRNA: 3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 41373 | 0.7 | 0.525433 |
Target: 5'- ----gUCCGGCGAgcgccgguauuCCCGGCCcucGACCCa -3' miRNA: 3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 25072 | 0.7 | 0.525433 |
Target: 5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3' miRNA: 3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 19439 | 0.7 | 0.525433 |
Target: 5'- -----gUgGACAagGCCCuGGCCGACCUCa -3' miRNA: 3'- caauaaGgUUGU--UGGG-CCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 23497 | 0.7 | 0.525433 |
Target: 5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3' miRNA: 3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 18136 | 0.7 | 0.558476 |
Target: 5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3' miRNA: 3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 14599 | 0.7 | 0.50382 |
Target: 5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3' miRNA: 3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 27912 | 0.71 | 0.4826 |
Target: 5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3' miRNA: 3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 15318 | 0.71 | 0.472153 |
Target: 5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3' miRNA: 3'- caAUAAGguUGUUGggCCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 8873 | 0.72 | 0.445543 |
Target: 5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3' miRNA: 3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 29328 | 0.73 | 0.383829 |
Target: 5'- ----gUCCAcccCGACaCCGGCCGGCCUUa -3' miRNA: 3'- caauaAGGUu--GUUG-GGCCGGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 12339 | 0.73 | 0.381078 |
Target: 5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3' miRNA: 3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 21328 | 0.73 | 0.365739 |
Target: 5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3' miRNA: 3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 4675 | 0.74 | 0.348247 |
Target: 5'- -----gCCAACAuugGCCUGGCUGACCUg -3' miRNA: 3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 756 | 0.79 | 0.170004 |
Target: 5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3' miRNA: 3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5' |
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26817 | 5' | -53.1 | NC_005809.1 | + | 16661 | 0.66 | 0.790121 |
Target: 5'- -----gCCAACAccaucGCgUGGUCGGCCUCg -3' miRNA: 3'- caauaaGGUUGU-----UGgGCCGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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