miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26817 5' -53.1 NC_005809.1 + 1683 0.67 0.737722
Target:  5'- ------aCGACAcGCCCgacuacgaagGGCCGACCCUc -3'
miRNA:   3'- caauaagGUUGU-UGGG----------CCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 41568 0.67 0.737722
Target:  5'- ---uUUCCuguGCGACCCGGCgCGcguACUUCa -3'
miRNA:   3'- caauAAGGu--UGUUGGGCCG-GC---UGGGG- -5'
26817 5' -53.1 NC_005809.1 + 40608 0.67 0.726853
Target:  5'- -----aCCGGCAuaCCGGCCG-CCUCg -3'
miRNA:   3'- caauaaGGUUGUugGGCCGGCuGGGG- -5'
26817 5' -53.1 NC_005809.1 + 687 0.67 0.726853
Target:  5'- ------aCGGCGGCgCCGGCCGGgCCg -3'
miRNA:   3'- caauaagGUUGUUG-GGCCGGCUgGGg -5'
26817 5' -53.1 NC_005809.1 + 34331 0.67 0.715885
Target:  5'- --gAUUCCAGCGACUUcGCCGACg-- -3'
miRNA:   3'- caaUAAGGUUGUUGGGcCGGCUGggg -5'
26817 5' -53.1 NC_005809.1 + 37499 0.67 0.715885
Target:  5'- -cUGUUCCAACcgcaaaaccuGCCgCGGCCuGugCUCa -3'
miRNA:   3'- caAUAAGGUUGu---------UGG-GCCGG-CugGGG- -5'
26817 5' -53.1 NC_005809.1 + 28388 0.67 0.704829
Target:  5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3'
miRNA:   3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5'
26817 5' -53.1 NC_005809.1 + 32372 0.67 0.704829
Target:  5'- -----gCCGAgGcCCCGGCCG-CCCa -3'
miRNA:   3'- caauaaGGUUgUuGGGCCGGCuGGGg -5'
26817 5' -53.1 NC_005809.1 + 12014 0.67 0.704829
Target:  5'- -----gCCAGCAGCgCGGCCGugGCCg- -3'
miRNA:   3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5'
26817 5' -53.1 NC_005809.1 + 35927 0.67 0.693698
Target:  5'- --gGUUCCccGGCAACCUGuaCGugUCCg -3'
miRNA:   3'- caaUAAGG--UUGUUGGGCcgGCugGGG- -5'
26817 5' -53.1 NC_005809.1 + 28900 0.67 0.693698
Target:  5'- ----cUUCGGCAAgUCCGGCCGcaACCCg -3'
miRNA:   3'- caauaAGGUUGUU-GGGCCGGC--UGGGg -5'
26817 5' -53.1 NC_005809.1 + 34439 0.67 0.686988
Target:  5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3'
miRNA:   3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5'
26817 5' -53.1 NC_005809.1 + 2423 0.67 0.682503
Target:  5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3'
miRNA:   3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5'
26817 5' -53.1 NC_005809.1 + 7124 0.67 0.682503
Target:  5'- -----gUCAugAaguACCUGGCCG-CCCCg -3'
miRNA:   3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5'
26817 5' -53.1 NC_005809.1 + 20323 0.68 0.648662
Target:  5'- -----gCCAACAGCagcaaCaGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGUUGg----GcCGGCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 7624 0.68 0.64753
Target:  5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3'
miRNA:   3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5'
26817 5' -53.1 NC_005809.1 + 13174 0.68 0.637334
Target:  5'- -----gCCGGCAACCCGGaaCGGCUCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5'
26817 5' -53.1 NC_005809.1 + 29750 0.68 0.637334
Target:  5'- --aGUUCCGAUuuucaAACacaCGGCCGcGCCCUg -3'
miRNA:   3'- caaUAAGGUUG-----UUGg--GCCGGC-UGGGG- -5'
26817 5' -53.1 NC_005809.1 + 5820 0.68 0.626002
Target:  5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3'
miRNA:   3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5'
26817 5' -53.1 NC_005809.1 + 677 0.69 0.603364
Target:  5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3'
miRNA:   3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.