miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 38246 0.68 0.13203
Target:  5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3'
miRNA:   3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5'
26818 3' -65.8 NC_005809.1 + 20226 0.68 0.125165
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 4678 0.67 0.163088
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 12285 0.67 0.158873
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 18469 0.67 0.154756
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26818 3' -65.8 NC_005809.1 + 42401 0.67 0.154756
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27422 0.67 0.150736
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27701 0.67 0.163088
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 22078 0.67 0.167403
Target:  5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3'
miRNA:   3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 27808 0.67 0.170485
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 33255 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33639 0.67 0.176342
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAGa -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 24012 0.67 0.176342
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 24519 0.67 0.15034
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26818 3' -65.8 NC_005809.1 + 40691 0.67 0.171821
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26818 3' -65.8 NC_005809.1 + 4876 0.67 0.15435
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26818 3' -65.8 NC_005809.1 + 33543 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33399 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 23091 0.67 0.171821
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 8178 0.67 0.150736
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.