miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 18143 0.67 0.17818
Target:  5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3'
miRNA:   3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 13078 0.67 0.171821
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 38070 0.67 0.171821
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 11487 0.67 0.163088
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26818 3' -65.8 NC_005809.1 + 2621 0.67 0.163088
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 25415 0.67 0.158873
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 27808 0.67 0.170485
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 23091 0.67 0.171821
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 33255 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33399 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 40691 0.67 0.171821
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26818 3' -65.8 NC_005809.1 + 24012 0.67 0.176342
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33639 0.67 0.176342
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAGa -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33447 0.66 0.190546
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 34884 0.66 0.1945
Target:  5'- -aGCCGGC-CGCCGaggucaaGCCCGacgaccuggccccCGGUGAGa -3'
miRNA:   3'- agCGGCCGuGCGGC-------CGGGU-------------GCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 28639 0.66 0.205745
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 33207 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33351 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 7784 0.66 0.200565
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26818 3' -65.8 NC_005809.1 + 27247 0.66 0.205745
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.