miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 27247 0.66 0.205745
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26818 3' -65.8 NC_005809.1 + 27422 0.67 0.150736
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27518 0.7 0.100892
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27701 0.67 0.163088
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27757 0.74 0.050526
Target:  5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3'
miRNA:   3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 27808 0.67 0.170485
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 27904 0.68 0.146812
Target:  5'- -aGCagCGGCGCgGCCGGCgCCACcGCGGg -3'
miRNA:   3'- agCG--GCCGUG-CGGCCG-GGUGcCGCUu -5'
26818 3' -65.8 NC_005809.1 + 28553 0.69 0.118631
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 28639 0.66 0.205745
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 28718 0.7 0.092989
Target:  5'- cCGCCGGCACcgauCUGGCaCUGCGcGCGGAa -3'
miRNA:   3'- aGCGGCCGUGc---GGCCG-GGUGC-CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 31025 0.66 0.185703
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 31106 0.68 0.139241
Target:  5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3'
miRNA:   3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5'
26818 3' -65.8 NC_005809.1 + 31772 0.66 0.200565
Target:  5'- gCGCgCGGCGgGCUGGUCa--GGCGGu -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGgugCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 31970 0.69 0.121857
Target:  5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3'
miRNA:   3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 32388 0.79 0.016883
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 33207 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33255 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33303 0.66 0.190546
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33351 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33399 0.67 0.171821
Target:  5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.